Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHN15_RS26695 Genome accession   NZ_CP107746
Coordinates   5985033..5986046 (+) Length   337 a.a.
NCBI ID   WP_327126924.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5980033..5991046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS26675 (OHN15_26735) - 5980337..5982013 (+) 1677 WP_327126920.1 ABC transporter substrate-binding protein -
  OHN15_RS26680 (OHN15_26740) - 5982035..5983081 (+) 1047 WP_406294582.1 ABC transporter ATP-binding protein -
  OHN15_RS26685 (OHN15_26745) - 5983078..5984058 (+) 981 WP_327126922.1 ABC transporter permease -
  OHN15_RS26690 (OHN15_26750) - 5984062..5985036 (+) 975 WP_406294584.1 ABC transporter permease -
  OHN15_RS26695 (OHN15_26755) amiE 5985033..5986046 (+) 1014 WP_327126924.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS26700 (OHN15_26760) - 5986075..5987493 (+) 1419 WP_406294586.1 GH1 family beta-glucosidase -
  OHN15_RS26705 (OHN15_26765) - 5987649..5990762 (+) 3114 WP_406294588.1 glycoside hydrolase family 3 protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36658.05 Da        Isoelectric Point: 6.6020

>NTDB_id=645343 OHN15_RS26695 WP_327126924.1 5985033..5986046(+) (amiE) [Streptomyces sp. NBC_00624]
MSEPVLTISGLNVDYGTGDAAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHRRDGEAL
DLLTLTAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPEMNRTERTARAKELLSLVGISADRLSAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVKLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGASDIYQDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKALEPCATHVPVLDRPEGDGSRT
VACWLHQPAPATVAPRS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=645343 OHN15_RS26695 WP_327126924.1 5985033..5986046(+) (amiE) [Streptomyces sp. NBC_00624]
ATGAGCGAGCCCGTCCTCACCATCAGCGGCCTGAACGTGGACTACGGCACCGGGGACGCCGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGAGGTGAAGTCCTCGGCCTGGCAGGCGAGTCGGGCTCCGGCAAGTCCACCCTGGCCTACG
CCGTCACCCGTCTCCTCTCACCGCCCGGAGTGATCACCGGCGGCGAGGTCCACTACCACCGGCGCGACGGCGAAGCGCTC
GACCTGCTGACCCTGACCGCCCCCGAGCTCCGCGCCTTCCGCTGGCAGGAGTTGTCGATCGTCTTCCAGGGAGCGATGAA
CTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTGCTCAAGGCGCACCGCCCGGAGATGAACCGGACCG
AACGCACCGCACGCGCGAAGGAACTGCTGTCGCTGGTGGGCATCTCCGCGGACCGGCTCTCCGCCTACCCGCACCAGCTC
TCCGGGGGCATGCGCCAGCGCGTGATGATCGCGATGGCGCTCGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAGCTGGTCAAGCTCCGCGAGGAGCTGGGCTTCTCGGTCG
TCTTCATCACGCACGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGTGCCTCCGACATCTACCAGGACCCCCGCCACCCCTACAGCGACGGCCTGCTGCACTCCTTCCCGGCTCTGCA
CGGCCCCCGTCGCGAACTCACCGGCATCCCCGGCTCGCCCCCGCATCTGTCCGCGATGCCGGCCGGCTGCGCCTTCCATC
CCCGCTGCGGCAAGGCACTCGAGCCGTGCGCCACCCACGTGCCGGTACTCGACCGGCCGGAAGGGGACGGCTCCCGCACG
GTGGCCTGCTGGCTGCATCAGCCGGCCCCGGCCACCGTCGCCCCCCGTTCGTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.209

99.407

0.38
  amiE Streptococcus thermophilus LMD-9

38.209

99.407

0.38
  amiE Streptococcus salivarius strain HSISS4

37.91

99.407

0.377