Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L0992_RS00560 Genome accession   NZ_CP090854
Coordinates   125675..126388 (-) Length   237 a.a.
NCBI ID   WP_373951361.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120675..131388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS00535 (L0992_00535) - 121878..122366 (+) 489 WP_017629483.1 type II secretion system protein M -
  L0992_RS00540 (L0992_00540) - 122368..123147 (+) 780 WP_373949378.1 type II secretion system protein N -
  L0992_RS00545 (L0992_00545) cysQ 123269..124096 (-) 828 WP_048663063.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L0992_RS00550 (L0992_00550) nudE 124131..124682 (-) 552 WP_373949380.1 ADP compounds hydrolase NudE -
  L0992_RS00555 (L0992_00555) nfuA 124981..125565 (-) 585 WP_026084098.1 Fe-S biogenesis protein NfuA -
  L0992_RS00560 (L0992_00560) comF 125675..126388 (-) 714 WP_373951361.1 ComF family protein Machinery gene
  L0992_RS00565 (L0992_00565) bioH 126482..127258 (+) 777 WP_373949383.1 pimeloyl-ACP methyl ester esterase BioH -
  L0992_RS00570 (L0992_00570) - 127433..127906 (+) 474 WP_017063078.1 hypothetical protein -
  L0992_RS00575 (L0992_00575) - 128034..130364 (-) 2331 WP_373949386.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27164.48 Da        Isoelectric Point: 9.1596

>NTDB_id=645242 L0992_RS00560 WP_373951361.1 125675..126388(-) (comF) [Vibrio pomeroyi strain YSX02]
MLSDWLQKHTPRLVTPQCHLCKLDKCPSDTHPRWCNSCLKLFEPVPRCQRCGLKTVTTVEQCGECLSKPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSKLLASRIEEPASLLTSVPLHWQRYIYRGFNQSQLLARYTAHELNIKNAVLFRRTR
STTSQQGLTKSARKSNLKGAFVLKNLNFSATDYSHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=645242 L0992_RS00560 WP_373951361.1 125675..126388(-) (comF) [Vibrio pomeroyi strain YSX02]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGTCACCTGTGTAAGCTAGATAAATGTCC
TAGTGATACACATCCTCGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTACCTCGCTGCCAACGATGTGGCTTAA
AAACCGTCACCACTGTTGAGCAGTGTGGTGAGTGTTTATCAAAGCCACCACCTTGGCATCGCCTCTATTGTGTCGGCGAT
TACACCTTTCCAACCGCTGGTTATATTCAACAAATGAAGTACGCGGATAAGTTCTGGTTTGCTCGCGACTTGTCGAAACT
ATTAGCGTCACGGATTGAAGAGCCCGCGTCGTTACTCACGAGTGTCCCACTGCATTGGCAAAGGTACATTTATCGTGGCT
TTAATCAGAGTCAGTTATTGGCGCGTTACACTGCTCACGAGCTCAACATCAAAAATGCCGTTTTATTTAGACGAACCCGC
TCAACCACTTCGCAACAAGGGCTCACTAAGTCGGCAAGAAAAAGTAATCTGAAAGGCGCTTTCGTTCTGAAAAATTTAAA
CTTCTCAGCGACGGATTATTCGCACATCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGGGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.042

100

0.553
  comF Vibrio campbellii strain DS40M4

49.59

100

0.511