Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L0994_RS14220 Genome accession   NZ_CP090847
Coordinates   3151741..3152454 (+) Length   237 a.a.
NCBI ID   WP_016801014.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain WXL032     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3146741..3157454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS14205 (L0994_14155) - 3147587..3149917 (+) 2331 WP_016791812.1 Tex family protein -
  L0994_RS14210 (L0994_14160) - 3150042..3150515 (-) 474 WP_010433611.1 hypothetical protein -
  L0994_RS14215 (L0994_14165) bioH 3150871..3151647 (-) 777 WP_372036761.1 pimeloyl-ACP methyl ester esterase BioH -
  L0994_RS14220 (L0994_14170) comF 3151741..3152454 (+) 714 WP_016801014.1 phosphoribosyltransferase family protein Machinery gene
  L0994_RS14225 (L0994_14175) nfuA 3152565..3153149 (+) 585 WP_010433605.1 Fe-S biogenesis protein NfuA -
  L0994_RS14230 (L0994_14180) nudE 3153432..3153983 (+) 552 WP_010433602.1 ADP compounds hydrolase NudE -
  L0994_RS14235 (L0994_14185) cysQ 3154020..3154847 (+) 828 WP_373929913.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L0994_RS14240 (L0994_14190) - 3154972..3155751 (-) 780 WP_029189438.1 type II secretion system protein N -
  L0994_RS14245 (L0994_14195) - 3155753..3156241 (-) 489 WP_016768269.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27259.25 Da        Isoelectric Point: 8.3132

>NTDB_id=645232 L0994_RS14220 WP_016801014.1 3151741..3152454(+) (comF) [Vibrio cyclitrophicus strain WXL032]
MLSDWLQKNTPRLVTPQCHLCKLDKLPNDTHPRWCQSCLDLFCQQPRCQRCGLKTLLTVEQCGQCLSQPPPWHHLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLAPHIQHPAPLITGVPLHWTRYLHRGFNQSQLLAHYTAQELNVKSAVLFRRSR
STDSQQGLTKSARQNNLEDAFTLRNTNFSTNDDSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=645232 L0994_RS14220 WP_016801014.1 3151741..3152454(+) (comF) [Vibrio cyclitrophicus strain WXL032]
ATGTTATCTGATTGGCTACAAAAAAACACACCACGCCTGGTCACACCTCAGTGCCACCTATGCAAGCTAGACAAACTCCC
CAATGATACTCATCCTCGATGGTGTCAGTCTTGCCTCGATCTCTTTTGCCAACAGCCACGCTGCCAACGATGTGGGTTAA
AAACACTACTCACAGTCGAGCAGTGTGGTCAATGCTTGTCTCAGCCTCCACCTTGGCATCATCTCTATTGTGTAGGTGAC
TACACCTTTCCAACGGCGCGTTATATCCAACAAATGAAATACGCCGATAAGTTCTGGTTCGCTCGCGATCTATCAAAATT
GTTAGCGCCACATATTCAGCACCCAGCGCCTTTGATTACCGGTGTTCCCTTACATTGGACTCGATACCTTCATCGAGGTT
TTAACCAAAGCCAGTTATTGGCACATTACACAGCTCAGGAGCTGAATGTTAAAAGTGCGGTTTTATTTCGTCGATCTCGC
TCAACAGATTCGCAGCAAGGATTAACCAAATCAGCAAGGCAGAACAACCTGGAAGACGCTTTCACGCTGCGCAATACGAA
TTTTTCAACGAACGATGACTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.085

99.578

0.549
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502