Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   L0993_RS00595 Genome accession   NZ_CP090845
Coordinates   132376..133089 (-) Length   237 a.a.
NCBI ID   WP_373938047.1    Uniprot ID   -
Organism   Vibrio kanaloae strain WXL161     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127376..138089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0993_RS00570 (L0993_00570) - 128564..129052 (+) 489 WP_373938042.1 type II secretion system protein M -
  L0993_RS00575 (L0993_00575) - 129054..129833 (+) 780 WP_373938044.1 type II secretion system protein N -
  L0993_RS00580 (L0993_00580) cysQ 129953..130780 (-) 828 WP_046223426.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L0993_RS00585 (L0993_00585) nudE 130838..131389 (-) 552 WP_373938046.1 ADP compounds hydrolase NudE -
  L0993_RS00590 (L0993_00590) nfuA 131682..132266 (-) 585 WP_029626881.1 Fe-S biogenesis protein NfuA -
  L0993_RS00595 comF 132376..133089 (-) 714 WP_373938047.1 ComF family protein Machinery gene
  L0993_RS00600 (L0993_00600) bioH 133183..133959 (+) 777 WP_060466919.1 pimeloyl-ACP methyl ester esterase BioH -
  L0993_RS00605 (L0993_00605) - 134153..134626 (+) 474 WP_060466920.1 hypothetical protein -
  L0993_RS00610 (L0993_00610) - 134834..137167 (-) 2334 WP_373938049.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27187.46 Da        Isoelectric Point: 8.9140

>NTDB_id=645152 L0993_RS00595 WP_373938047.1 132376..133089(-) (comF) [Vibrio kanaloae strain WXL161]
MLSDWLQKHTPRLVTSQCHLCKLDKLPSDTHPRWCQTCLGLFCQQPRCQQCGLKTLTSVEQCGQCLSNPPPWHRLYCVGD
YVFPTAHYIQQMKYADKFWFARDLSKLLAPRIEHPAPLITSVPLHWGRYIHRGFNQSQLLAHYAAQELDVKSAVLFRRSR
STISQQGLTKSARQINLKNAFTLRNMHFSTNNYAHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=645152 L0993_RS00595 WP_373938047.1 132376..133089(-) (comF) [Vibrio kanaloae strain WXL161]
ATGTTATCCGATTGGCTACAAAAACACACACCGCGCCTGGTCACATCACAATGCCACCTGTGCAAACTAGACAAACTCCC
CAGCGATACTCATCCTCGGTGGTGCCAGACTTGCCTCGGTCTCTTTTGCCAACAGCCACGCTGCCAGCAATGTGGCTTGA
AAACCTTAACTAGCGTCGAACAATGTGGTCAATGTCTATCGAATCCACCACCTTGGCATCGTCTCTATTGTGTGGGTGAC
TACGTCTTTCCAACAGCACACTATATCCAACAGATGAAATACGCCGATAAATTTTGGTTTGCGCGCGATCTATCAAAACT
GTTAGCGCCACGTATTGAACACCCAGCGCCATTGATAACCAGTGTGCCTCTACATTGGGGACGGTATATTCACAGGGGCT
TTAACCAGAGTCAGTTATTAGCCCATTACGCAGCCCAAGAGTTGGACGTCAAAAGCGCGGTTTTATTTCGTCGTTCTCGT
TCAACGATTTCACAGCAAGGATTAACCAAGTCCGCAAGGCAGATCAATCTAAAAAACGCTTTCACGCTGCGCAATATGCA
TTTTTCAACGAACAATTATGCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGCACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.237

99.578

0.54
  comF Vibrio campbellii strain DS40M4

48.77

100

0.502