Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LT978_RS11100 Genome accession   NZ_CP090838
Coordinates   2286912..2287691 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain TL106     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2281912..2292691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS11070 (LT978_11065) fliH 2281956..2282711 (-) 756 WP_015388237.1 flagellar assembly protein FliH -
  LT978_RS11075 (LT978_11070) fliG 2282704..2283720 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LT978_RS11080 (LT978_11075) fliF 2283733..2285343 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  LT978_RS11085 (LT978_11080) fliE 2285386..2285706 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LT978_RS11090 (LT978_11085) flgC 2285717..2286169 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  LT978_RS11095 (LT978_11090) flgB 2286169..2286558 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LT978_RS11100 (LT978_11095) codY 2286912..2287691 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LT978_RS11105 (LT978_11100) hslU 2287729..2289141 (-) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  LT978_RS11110 (LT978_11105) hslV 2289149..2289694 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LT978_RS11115 (LT978_11110) xerC 2289710..2290627 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  LT978_RS11120 (LT978_11115) trmFO 2290697..2292004 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=645074 LT978_RS11100 WP_003154263.1 2286912..2287691(-) (codY) [Bacillus amyloliquefaciens strain TL106]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=645074 LT978_RS11100 WP_003154263.1 2286912..2287691(-) (codY) [Bacillus amyloliquefaciens strain TL106]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471