Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OIO47_RS01635 Genome accession   NZ_CP107614
Coordinates   350976..351473 (+) Length   165 a.a.
NCBI ID   WP_031961388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326927-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345976..356473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO47_RS01600 (OIO47_01600) - 345987..348092 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OIO47_RS01605 (OIO47_01605) - 348132..348262 (-) 131 Protein_306 hypothetical protein -
  OIO47_RS01610 (OIO47_01610) rpoZ 348301..348579 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO47_RS01615 (OIO47_01615) gmk 348652..349281 (-) 630 WP_000015937.1 guanylate kinase -
  OIO47_RS01620 (OIO47_01620) ispH 349404..350354 (+) 951 WP_031961390.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO47_RS01625 (OIO47_01625) - 350367..350615 (-) 249 Protein_310 hypothetical protein -
  OIO47_RS01630 (OIO47_01630) - 350521..350961 (+) 441 WP_031961389.1 Tfp pilus assembly protein FimT/FimU -
  OIO47_RS01635 (OIO47_01635) pilV 350976..351473 (+) 498 WP_031961388.1 type IV pilus modification protein PilV Machinery gene
  OIO47_RS01640 (OIO47_01640) - 351466..352383 (+) 918 WP_031961387.1 PilW family protein -
  OIO47_RS01645 (OIO47_01645) - 352380..353069 (+) 690 WP_079281925.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17555.04 Da        Isoelectric Point: 4.8148

>NTDB_id=644792 OIO47_RS01635 WP_031961388.1 350976..351473(+) (pilV) [Acinetobacter baumannii strain 1326927-2]
MIMSQKGAGLMEVLVALLLLSIAVLGFVALQIRAVAASTEAGQNIQATNIARDLAERIRVNRAGLSNYAEIGASDVLPTC
STGECDADQMAKYDYAQVKQRATDLGMSLAILNCKGFSSQRTRQCIYVAWGGTTATDGNGSPNCTNGTAYVPDAKCIIME
VYNYD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=644792 OIO47_RS01635 WP_031961388.1 350976..351473(+) (pilV) [Acinetobacter baumannii strain 1326927-2]
ATGATAATGTCTCAAAAAGGTGCTGGTTTAATGGAAGTTCTTGTTGCACTACTTTTATTGAGTATTGCTGTACTTGGTTT
TGTTGCTTTACAAATACGAGCAGTTGCTGCAAGTACTGAAGCAGGTCAGAACATTCAAGCAACCAATATTGCCCGAGATT
TAGCAGAGCGTATACGTGTAAACCGAGCTGGTTTGAGTAACTATGCTGAAATTGGTGCAAGTGACGTACTGCCAACTTGT
TCTACAGGGGAGTGTGATGCTGATCAGATGGCAAAATACGATTATGCCCAAGTCAAACAACGTGCTACAGATTTAGGTAT
GAGTCTTGCAATATTGAATTGTAAAGGTTTTTCATCACAACGAACTCGTCAATGTATATATGTAGCATGGGGTGGTACAA
CAGCTACAGATGGTAATGGTAGTCCGAATTGTACTAATGGTACCGCCTATGTACCTGACGCAAAATGTATCATTATGGAG
GTTTATAACTATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.424
  pilV Acinetobacter baylyi ADP1

36.932

100

0.394