Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7Q98_RS01895 Genome accession   NZ_AP021914
Coordinates   416071..416538 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain WP2-W18-CRE-03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411071..421538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7Q98_RS01870 (WP2W18C03_03740) rpsG 411212..411682 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H7Q98_RS01875 (WP2W18C03_03750) fusA 411779..413893 (+) 2115 WP_000124700.1 elongation factor G -
  H7Q98_RS01880 (WP2W18C03_03760) tuf 413964..415148 (+) 1185 WP_000031783.1 elongation factor Tu -
  H7Q98_RS01885 (WP2W18C03_03770) bfd 415331..415525 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H7Q98_RS01890 (WP2W18C03_03780) bfr 415598..416074 (+) 477 WP_000675515.1 bacterioferritin -
  H7Q98_RS01895 (WP2W18C03_03790) pilD 416071..416538 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  H7Q98_RS01900 (WP2W18C03_03800) rpsJ 416917..417228 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H7Q98_RS01905 (WP2W18C03_03810) rplC 417261..417890 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H7Q98_RS01910 (WP2W18C03_03820) rplD 417901..418506 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H7Q98_RS01915 (WP2W18C03_03830) rplW 418503..418805 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H7Q98_RS01920 (WP2W18C03_03840) rplB 418823..419644 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H7Q98_RS01925 (WP2W18C03_03850) rpsS 419661..419939 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H7Q98_RS01930 (WP2W18C03_03860) rplV 419954..420286 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H7Q98_RS01935 (WP2W18C03_03870) rpsC 420304..421005 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H7Q98_RS01940 (WP2W18C03_03880) rplP 421018..421428 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=64454 H7Q98_RS01895 WP_000339836.1 416071..416538(-) (pilD) [Escherichia coli strain WP2-W18-CRE-03]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=64454 H7Q98_RS01895 WP_000339836.1 416071..416538(-) (pilD) [Escherichia coli strain WP2-W18-CRE-03]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment