Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LZI70_RS06320 Genome accession   NZ_CP090614
Coordinates   1459766..1460488 (+) Length   240 a.a.
NCBI ID   WP_255231693.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454766..1465488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS06305 (LZI70_06295) - 1455571..1457892 (+) 2322 WP_255231690.1 Tex family protein -
  LZI70_RS06310 (LZI70_06300) - 1458250..1458723 (-) 474 WP_255231691.1 ATP-dependent Lon protease -
  LZI70_RS06315 (LZI70_06305) bioH 1458898..1459674 (-) 777 WP_255231692.1 pimeloyl-ACP methyl ester esterase BioH -
  LZI70_RS06320 (LZI70_06310) comF 1459766..1460488 (+) 723 WP_255231693.1 ComF family protein Machinery gene
  LZI70_RS06325 (LZI70_06315) nfuA 1460597..1461181 (+) 585 WP_032551117.1 Fe-S biogenesis protein NfuA -
  LZI70_RS06330 (LZI70_06320) nudE 1461446..1462009 (+) 564 WP_255231694.1 ADP compounds hydrolase NudE -
  LZI70_RS06335 (LZI70_06325) cysQ 1462020..1462847 (+) 828 WP_255231695.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LZI70_RS06340 (LZI70_06330) - 1463077..1465275 (+) 2199 WP_255231696.1 DUF7151 family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27432.98 Da        Isoelectric Point: 9.3643

>NTDB_id=643987 LZI70_RS06320 WP_255231693.1 1459766..1460488(+) (comF) [Vibrio pelagius strain WXL662]
MLSDWLQKHTPRLVTPQCQLCQLPKQPKDTHPKWCNSCLSQFAPQHRCQRCGIKLDIDAIVCGACLKTPPPWHRLYCVGD
YDFPLSHYVHQMKYSGQFWLCRDLVKLLASHIEQPAPIITSVPLHWRRYLHRGFNQSVLLAGALAHQLNSQSLTLFKRQR
ATPTQQGLSKTQRQHNLRNAFSLRNKDVMKVIAKGDAHVAIMDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPAS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=643987 LZI70_RS06320 WP_255231693.1 1459766..1460488(+) (comF) [Vibrio pelagius strain WXL662]
ATGTTATCTGATTGGCTCCAAAAACACACACCACGCTTGGTCACACCACAATGCCAGCTCTGTCAATTGCCAAAGCAGCC
TAAAGATACCCATCCTAAGTGGTGCAATAGCTGTCTATCTCAATTCGCCCCCCAACACCGCTGCCAACGTTGTGGTATCA
AACTCGATATTGACGCCATAGTATGTGGGGCCTGCCTCAAAACACCACCACCTTGGCATCGGCTCTATTGTGTTGGAGAT
TACGATTTCCCACTCAGCCATTACGTCCACCAGATGAAGTACAGTGGTCAATTTTGGTTGTGCCGAGACTTAGTCAAACT
GCTGGCCAGCCATATTGAGCAACCTGCCCCTATCATTACCAGCGTGCCACTGCATTGGCGGCGTTACCTGCATCGCGGGT
TTAATCAAAGCGTATTGTTAGCCGGTGCTCTTGCTCACCAACTTAACAGCCAGAGTCTTACGCTGTTTAAGCGTCAACGT
GCCACGCCAACGCAGCAAGGGCTTAGCAAGACGCAACGTCAGCATAATCTGCGCAATGCTTTTTCTTTAAGGAACAAGGA
TGTGATGAAAGTGATAGCAAAAGGCGACGCCCATGTTGCAATAATGGATGATGTCGTCACCACAGGCAGTACTGTGTATC
AATTATGTCAATTGCTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCGCGTCT
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.187

100

0.554
  comF Vibrio campbellii strain DS40M4

51.012

100

0.525