Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L0J99_RS00625 Genome accession   NZ_CP090598
Coordinates   169390..171222 (+) Length   610 a.a.
NCBI ID   WP_034880196.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain JCLA3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 164390..176222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0J99_RS00605 (L0J99_00605) thiS 164702..164896 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  L0J99_RS00610 (L0J99_00610) - 165452..166504 (+) 1053 WP_234737550.1 aldo/keto reductase -
  L0J99_RS00615 (L0J99_00615) - 166621..167115 (+) 495 WP_022244787.1 MarR family winged helix-turn-helix transcriptional regulator -
  L0J99_RS00620 (L0J99_00620) - 167421..169388 (+) 1968 WP_418884035.1 ABC transporter ATP-binding protein -
  L0J99_RS00625 (L0J99_00625) rcrQ 169390..171222 (+) 1833 WP_034880196.1 ABC transporter ATP-binding protein Regulator
  L0J99_RS00630 (L0J99_00630) - 171308..172276 (-) 969 WP_234737551.1 FAD:protein FMN transferase -
  L0J99_RS00635 (L0J99_00635) - 172383..173789 (+) 1407 WP_022244783.1 MFS transporter -
  L0J99_RS00640 (L0J99_00640) - 174182..175945 (+) 1764 WP_418884036.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66665.20 Da        Isoelectric Point: 5.7914

>NTDB_id=643876 L0J99_RS00625 WP_034880196.1 169390..171222(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain JCLA3]
MPGGPMGRGRGAVEKPQDFGGVMKKLVHFCRHYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGKPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALIMMFYNNVIMTVCAIASSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPDVTDKQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=643876 L0J99_RS00625 WP_034880196.1 169390..171222(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain JCLA3]
ATGCCAGGAGGACCTATGGGACGCGGCCGCGGGGCCGTTGAAAAACCGCAGGATTTCGGTGGTGTGATGAAGAAACTGGT
GCATTTCTGCCGCCACTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GTCCGGACAAACTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTAGTCAATGGCAAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACGCACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTACGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCATCATGATGTTCTACAACAA
TGTGATTATGACGGTGTGCGCCATCGCTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCAATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CTGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GTCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCCGGTCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGACGTCACCGACAAGCAGATCGAGGACGCA
TGCAAGGCCGTGGGGCTGCACCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCACCGTCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATCGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATCTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511