Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OIO86_RS17340 Genome accession   NZ_CP107581
Coordinates   3595771..3596268 (-) Length   165 a.a.
NCBI ID   WP_031961388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326525-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590771..3601268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO86_RS17330 (OIO86_17335) - 3594175..3594864 (-) 690 WP_079281925.1 pilus assembly protein PilX -
  OIO86_RS17335 (OIO86_17340) - 3594861..3595778 (-) 918 WP_031961387.1 PilW family protein -
  OIO86_RS17340 (OIO86_17345) pilV 3595771..3596268 (-) 498 WP_031961388.1 type IV pilus modification protein PilV Machinery gene
  OIO86_RS17345 (OIO86_17350) - 3596283..3596723 (-) 441 WP_031961389.1 Tfp pilus assembly protein FimT/FimU -
  OIO86_RS17350 (OIO86_17355) - 3596629..3596877 (+) 249 Protein_3390 hypothetical protein -
  OIO86_RS17355 (OIO86_17360) ispH 3596890..3597840 (-) 951 WP_031961390.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO86_RS17360 (OIO86_17365) gmk 3597963..3598592 (+) 630 WP_000015937.1 guanylate kinase -
  OIO86_RS17365 (OIO86_17370) rpoZ 3598665..3598943 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO86_RS17370 (OIO86_17375) - 3598982..3599112 (+) 131 Protein_3394 hypothetical protein -
  OIO86_RS17375 (OIO86_17380) - 3599152..3601257 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17555.04 Da        Isoelectric Point: 4.8148

>NTDB_id=643780 OIO86_RS17340 WP_031961388.1 3595771..3596268(-) (pilV) [Acinetobacter baumannii strain 1326525-2]
MIMSQKGAGLMEVLVALLLLSIAVLGFVALQIRAVAASTEAGQNIQATNIARDLAERIRVNRAGLSNYAEIGASDVLPTC
STGECDADQMAKYDYAQVKQRATDLGMSLAILNCKGFSSQRTRQCIYVAWGGTTATDGNGSPNCTNGTAYVPDAKCIIME
VYNYD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=643780 OIO86_RS17340 WP_031961388.1 3595771..3596268(-) (pilV) [Acinetobacter baumannii strain 1326525-2]
ATGATAATGTCTCAAAAAGGTGCTGGTTTAATGGAAGTTCTTGTTGCACTACTTTTATTGAGTATTGCTGTACTTGGTTT
TGTTGCTTTACAAATACGAGCAGTTGCTGCAAGTACTGAAGCAGGTCAGAACATTCAAGCAACCAATATTGCCCGAGATT
TAGCAGAGCGTATACGTGTAAACCGAGCTGGTTTGAGTAACTATGCTGAAATTGGTGCAAGTGACGTACTGCCAACTTGT
TCTACAGGGGAGTGTGATGCTGATCAGATGGCAAAATACGATTATGCCCAAGTCAAACAACGTGCTACAGATTTAGGTAT
GAGTCTTGCAATATTGAATTGTAAAGGTTTTTCATCACAACGAACTCGTCAATGTATATATGTAGCATGGGGTGGTACAA
CAGCTACAGATGGTAATGGTAGTCCGAATTGTACTAATGGTACCGCCTATGTACCTGACGCAAAATGTATCATTATGGAG
GTTTATAACTATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.424
  pilV Acinetobacter baylyi ADP1

36.932

100

0.394