Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OFY20_RS07865 Genome accession   NZ_CP107524
Coordinates   1523463..1525202 (-) Length   579 a.a.
NCBI ID   WP_000323509.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SA5087     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518463..1530202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY20_RS07845 (OFY20_07845) - 1519142..1519552 (-) 411 WP_000594935.1 peptide deformylase -
  OFY20_RS07850 (OFY20_07850) gdhA 1519622..1520971 (-) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  OFY20_RS07855 (OFY20_07855) - 1521139..1521648 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -
  OFY20_RS07860 (OFY20_07860) rcrQ 1521689..1523458 (-) 1770 WP_001227935.1 ABC transporter ATP-binding protein Regulator
  OFY20_RS07865 (OFY20_07865) rcrP 1523463..1525202 (-) 1740 WP_000323509.1 ABC transporter ATP-binding protein Regulator
  OFY20_RS07870 (OFY20_07870) - 1525269..1525742 (-) 474 WP_000586885.1 GNAT family N-acetyltransferase -
  OFY20_RS07875 (OFY20_07875) - 1525739..1527607 (-) 1869 WP_001279326.1 ABC-F family ATP-binding cassette domain-containing protein -
  OFY20_RS07880 (OFY20_07880) - 1527618..1528826 (-) 1209 WP_001238960.1 CCA tRNA nucleotidyltransferase -
  OFY20_RS07885 (OFY20_07885) - 1529011..1529859 (-) 849 WP_000761620.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64806.21 Da        Isoelectric Point: 6.2591

>NTDB_id=643551 OFY20_RS07865 WP_000323509.1 1523463..1525202(-) (rcrP) [Streptococcus agalactiae strain SA5087]
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRL
TTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVA
VAMPLLVGVVLYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTE
PLFVQIIIAMIVAIVWFALDSLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNA
EGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRD
YNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLS
IARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHAQLIENNA
IYREIAESQLKNQNLSEGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=643551 OFY20_RS07865 WP_000323509.1 1523463..1525202(-) (rcrP) [Streptococcus agalactiae strain SA5087]
ATGGCATATATTTGGTCTTATTTGAAAAGGTACCCCAATTGGTTATGGCTTGATTTACTAGGAGCTATGCTTTTTGTGAC
GGTTATCCTAGGAATGCCCACAGCCTTAGCGGGTATGATTGATAATGGCGTTACAAAAGGTGATCGGACTGGAGTTTATC
TGTGGACGTTCATCATGTTTATATTTGTTGTACTAGGTATTATTGGGCGTATTACGATGGCTTACGCATCTAGTCGCTTA
ACGACAACAATGATTAGAGATATGCGTAATGATATGTATGCTAAGCTTCAAGAATACTCCCATCATGAATATGAACAGAT
AGGTGTATCTTCACTAGTGACACGTATGACAAGCGATACTTTTGTTTTGATGCAATTTGCTGAAATGTCTTTACGTTTAG
GCCTAGTAACTCCTATGGTAATGATTTTTAGCGTGGTTATGATACTAATTACGAGTCCATCTTTGGCTTGGCTTGTAGCG
GTTGCGATGCCTCTTTTGGTAGGAGTCGTTTTATATGTAGCTATAAAAACAAAACCTTTATCTGAAAGACAACAGACTAT
GCTTGATAAAATCAATCAATATGTTCGTGAAAATTTAACAGGGTTACGCGTTGTTAGAGCCTTTGCAAGAGAGAATTTTC
AATCACAAAAATTTCAAGTCGCTAACCAACGTTACACAGATACTTCAACTGGTCTTTTTAAATTAACAGGGCTAACAGAA
CCACTTTTCGTTCAAATTATTATTGCAATGATTGTGGCTATCGTTTGGTTTGCTTTGGATTCCTTACAAAGAGGTGCTAT
TAAAATAGGGGATTTAGTTGCTTTTATCGAATATAGCTTCCATGCTCTCTTTTCATTTTTGCTATTTGCCAATCTTTTTA
CTATGTATCCTCGTATGGTGGTATCAAGTCATCGTATTAGAGAGGTGATGGATATGCCAATCTCTATCAATCCTAATGCC
GAAGGTGTTACGGATACGAAACTTAAAGGGCATTTAGAATTTGATAATGTAACATTCGCTTATCCAGGAGAAACAGAGAG
TCCCGTTTTGCATGATATTTCTTTTAAAGCTAAGCCTGGAGAAACAATTGCTTTTATTGGTTCAACAGGTTCAGGAAAAT
CTTCTCTTGTTAATTTGATTCCACGTTTTTATGATGTGACACTTGGAAAAATCTTAGTAGATGGAGTTGATGTAAGAGAT
TATAACCTTAAATCACTTCGCCAAAAGATTGGATTTATCCCCCAAAAAGCTCTTTTATTTACAGGGACAATAGGAGAGAA
TTTAAAATATGGAAAAGCTGATGCTACTATTGATGATCTTAGACAAGCGGTTGATATTTCTCAAGCTAAAGAGTTTATTG
AGAGTCACCAAGAAGCCTTTGAAACGCATTTAGCTGAAGGTGGGAGCAATCTTTCTGGGGGTCAAAAACAACGGTTATCT
ATTGCTAGGGCTGTTGTTAAAGATCCAGATTTATATATTTTTGATGATTCATTTTCTGCTCTCGATTATAAGACAGACGC
TACTTTAAGAGCGCGTCTAAAAGAAGTAACCGGTGATTCTACAGTTTTGATAGTTGCTCAAAGGGTGGGTACGATTATGG
ATGCTGATCAGATTATTGTCCTTGATGAAGGCGAAATTGTCGGTCGTGGTACCCACGCTCAATTAATAGAAAATAATGCT
ATTTATCGTGAAATCGCTGAGTCACAACTGAAGAACCAAAACTTATCAGAAGGAGAGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(30-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.011

94.301

0.368