Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPY96_RS06335 Genome accession   NZ_CP090568
Coordinates   1337952..1339406 (-) Length   484 a.a.
NCBI ID   WP_033836745.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1332952..1344406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS06310 (LPY96_06315) comP 1333524..1333952 (+) 429 WP_269340062.1 pilin Machinery gene
  LPY96_RS06315 pilA2 1334049..1334462 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY96_RS06320 (LPY96_06330) - 1334624..1335586 (+) 963 WP_005916682.1 IS1595 family transposase -
  LPY96_RS06325 (LPY96_06335) pilB 1335599..1337320 (+) 1722 WP_269340997.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPY96_RS06330 (LPY96_06340) - 1337598..1337765 (+) 168 WP_033836746.1 hypothetical protein -
  LPY96_RS06335 (LPY96_06345) pilR 1337952..1339406 (-) 1455 WP_033836745.1 sigma-54 dependent transcriptional regulator Regulator
  LPY96_RS06340 (LPY96_06350) - 1339673..1341286 (-) 1614 WP_269340063.1 HAMP domain-containing sensor histidine kinase -
  LPY96_RS06345 (LPY96_06355) sucC 1341518..1342687 (+) 1170 WP_269340064.1 ADP-forming succinate--CoA ligase subunit beta -
  LPY96_RS06350 (LPY96_06360) sucD 1342712..1343587 (+) 876 WP_269340065.1 succinate--CoA ligase subunit alpha -
  LPY96_RS06355 (LPY96_06365) - 1343761..1343946 (+) 186 WP_269340066.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52518.37 Da        Isoelectric Point: 6.8289

>NTDB_id=643517 LPY96_RS06335 WP_033836745.1 1337952..1339406(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=643517 LPY96_RS06335 WP_033836745.1 1337952..1339406(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471