Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA22_RS02480 Genome accession   NZ_CP107275
Coordinates   544226..544951 (-) Length   241 a.a.
NCBI ID   WP_073647009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 539226..549951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA22_RS02455 (PALA22_00492) - 539698..540213 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA22_RS02460 (PALA22_00493) rarD 540903..541799 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA22_RS02465 (PALA22_00494) - 542002..542976 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  PALA22_RS02470 (PALA22_00495) - 543038..543796 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA22_RS02475 (PALA22_00496) - 543864..544184 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  PALA22_RS02480 (PALA22_00497) comF 544226..544951 (-) 726 WP_073647009.1 ComF family protein Machinery gene
  PALA22_RS02485 (PALA22_00498) - 545090..545383 (-) 294 WP_003084806.1 hypothetical protein -
  PALA22_RS02490 (PALA22_00499) - 545437..546363 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  PALA22_RS02495 (PALA22_00500) - 546481..547239 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PALA22_RS02500 (PALA22_00501) - 547316..547564 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA22_RS02505 (PALA22_00502) - 547575..548951 (+) 1377 WP_080911343.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA22_RS02510 (PALA22_00503) - 548953..549831 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27120.66 Da        Isoelectric Point: 11.0261

>NTDB_id=643219 PALA22_RS02480 WP_073647009.1 544226..544951(-) (comF) [Pseudomonas aeruginosa strain PALA22]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDARVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=643219 PALA22_RS02480 WP_073647009.1 544226..544951(-) (comF) [Pseudomonas aeruginosa strain PALA22]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGTGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGTCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCATTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGAGGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382