Detailed information NTG0643188

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: LOD78_RS07180
• Genome accession: NZ_CP090522
• Coordinates: 1406089..1407024 (-)
• Length: 311 a.a.
• NCBI ID: WP_216806515.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS17
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1401089..1412024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD78_RS07150 (LOD78_07145)	-	1401267..1402907 (-)	1641	WP_274505945.1	polysaccharide biosynthesis protein	-
LOD78_RS07155 (LOD78_07150)	yghU	1403163..1403951 (-)	789	WP_274505239.1	glutathione-dependent disulfide-bond oxidoreductase	-
LOD78_RS07160 (LOD78_07155)	-	1403960..1404250 (-)	291	WP_171989863.1	hypothetical protein	-
LOD78_RS07165 (LOD78_07160)	rplA	1404356..1405045 (-)	690	WP_274505241.1	50S ribosomal protein L1	-
LOD78_RS07170 (LOD78_07165)	rplK	1405086..1405511 (-)	426	WP_024382554.1	50S ribosomal protein L11	-
LOD78_RS07175 (LOD78_07170)	-	1405666..1406034 (+)	369	WP_274505243.1	DUF3397 domain-containing protein	-
LOD78_RS07180 (LOD78_07175)	amiF	1406089..1407024 (-)	936	WP_216806515.1	ATP-binding cassette domain-containing protein	Regulator
LOD78_RS07185 (LOD78_07180)	oppD	1407021..1408064 (-)	1044	WP_171989134.1	ABC transporter ATP-binding protein	Regulator
LOD78_RS07190 (LOD78_07185)	-	1408079..1409110 (-)	1032	WP_024396826.1	ABC transporter permease	-
LOD78_RS07195 (LOD78_07190)	-	1409121..1410035 (-)	915	WP_171989135.1	ABC transporter permease	-
LOD78_RS07200 (LOD78_07195)	-	1410106..1411752 (-)	1647	WP_174845523.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35068.81 Da
• Isoelectric Point: 5.8231

>NTDB_id=643188 LOD78_RS07180 WP_216806515.1 1406089..1407024(-) (amiF) [Streptococcus parasuis strain SS17]
MSENRKKLVELKNVSLTFNAGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRTILKLYDYNAGDILFDGQSISKL
SGKDLKEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTPSKEERDERVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVRPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSDA
VYNDPLHPYTKSLLSAIPEPDPEFEKDRVHMEYDPSAELDGQERQMHEITPGHFVLATEEEAAAYRAERNK

Nucleotide

• Length: 936 bp

>NTDB_id=643188 LOD78_RS07180 WP_216806515.1 1406089..1407024(-) (amiF) [Streptococcus parasuis strain SS17]
ATGAGCGAAAATAGAAAAAAACTCGTTGAACTAAAAAATGTTTCATTGACTTTTAATGCAGGTAAGAAAAACGAAGTTAA
AGCCATTGACAATGTTTCCTTTGACATTTATGAAGGAGAGGTCTTTGGTCTCGTTGGTGAATCTGGGTCAGGAAAGACAA
CGGTTGGCCGTACCATTTTAAAGTTGTATGACTATAATGCTGGTGATATTCTCTTTGATGGCCAGTCTATTTCAAAGCTT
TCTGGAAAAGATTTGAAAGAATTTCGAAAAGATGCACAAATGATTTTCCAAGATCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATCAGAGATATTGTTGCAGAAGGTTTGGACATTCACGGTTTGACTCCTTCAAAAGAAGAACGGGATGAGCGTGTTC
AACATTTATTGGATTTAGTCGGTTTAAATAAGGATCATTTAACGCGTTATCCGCATGAGTTCTCAGGTGGACAACGACAA
CGGATTGGTATTGCACGTGCCTTAGCAGTTCGTCCAAAATTCATTATCGCTGACGAACCAATCTCAGCTTTAGATGTATC
CATTCAAGCACAAGTTGTTAATTTGATGCAAAAATTGCAGAGAGAACAAGGTCTAACCTACCTCTTTGTTGCACACGATT
TGTCAATGGTTAAGTACATCTCTGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTGGAAATTGGAACGTCGGATGCT
GTTTACAATGATCCACTTCATCCGTACACGAAGAGTTTGCTTTCTGCTATCCCTGAACCGGATCCAGAATTTGAAAAAGA
TCGTGTCCATATGGAATACGATCCAAGTGCTGAATTAGATGGTCAAGAACGTCAGATGCATGAGATTACGCCTGGTCACT
TTGTATTGGCTACAGAAGAAGAGGCTGCGGCATACCGCGCTGAACGAAACAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	52.597	99.035	0.521
amiF	Streptococcus thermophilus LMG 18311	52.273	99.035	0.518
amiF	Streptococcus salivarius strain HSISS4	51.948	99.035	0.514