Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LOD78_RS05975 Genome accession   NZ_CP090522
Coordinates   1172410..1173249 (-) Length   279 a.a.
NCBI ID   WP_274505093.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1167410..1178249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS05960 (LOD78_05955) uidA 1167771..1169570 (-) 1800 WP_274505090.1 beta-glucuronidase -
  LOD78_RS05965 (LOD78_05960) - 1169586..1170614 (-) 1029 WP_274505091.1 sugar kinase -
  LOD78_RS05970 (LOD78_05965) - 1170670..1172223 (-) 1554 WP_274505092.1 MFS transporter -
  LOD78_RS05975 (LOD78_05970) endA 1172410..1173249 (-) 840 WP_274505093.1 DNA/RNA non-specific endonuclease Machinery gene
  LOD78_RS05980 (LOD78_05975) - 1173279..1173470 (-) 192 WP_239603977.1 DNA-directed RNA polymerase subunit beta -
  LOD78_RS05985 (LOD78_05980) murA 1173463..1174746 (-) 1284 WP_274505094.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LOD78_RS05990 (LOD78_05985) - 1174769..1174996 (-) 228 WP_171988707.1 DUF1146 family protein -
  LOD78_RS05995 (LOD78_05990) - 1175056..1175472 (-) 417 WP_171988708.1 F0F1 ATP synthase subunit epsilon -
  LOD78_RS06000 (LOD78_05995) atpD 1175482..1176888 (-) 1407 WP_274505095.1 F0F1 ATP synthase subunit beta -
  LOD78_RS06005 (LOD78_06000) - 1176910..1177788 (-) 879 WP_171988710.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30066.36 Da        Isoelectric Point: 7.0738

>NTDB_id=643183 LOD78_RS05975 WP_274505093.1 1172410..1173249(-) (endA) [Streptococcus parasuis strain SS17]
MAKKNVKKQAMSLLSLLATIVAVAGGYLLSDNKSSNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTVLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=643183 LOD78_RS05975 WP_274505093.1 1172410..1173249(-) (endA) [Streptococcus parasuis strain SS17]
ATGGCGAAAAAAAATGTAAAAAAACAAGCAATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGCAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGTTTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGACGTACGTCATGGACTCCTGCTGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCGGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.275

91.398

0.606
  endA Streptococcus pneumoniae D39

66.275

91.398

0.606
  endA Streptococcus pneumoniae R6

66.275

91.398

0.606
  endA Streptococcus pneumoniae TIGR4

66.275

91.398

0.606