Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LZP85_RS15800 Genome accession   NZ_CP090431
Coordinates   3058081..3060444 (-) Length   787 a.a.
NCBI ID   WP_119543612.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3053081..3065444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS15780 (LZP85_15780) alaS 3053380..3056013 (-) 2634 WP_119543615.1 alanine--tRNA ligase -
  LZP85_RS15785 (LZP85_15785) - 3056412..3057476 (-) 1065 WP_374955889.1 AI-2E family transporter -
  LZP85_RS15790 (LZP85_15790) - 3057604..3057738 (-) 135 WP_119543613.1 YrzQ family protein -
  LZP85_RS15795 (LZP85_15795) - 3057760..3057951 (-) 192 WP_025911719.1 hypothetical protein -
  LZP85_RS15800 (LZP85_15800) recD2 3058081..3060444 (-) 2364 WP_119543612.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LZP85_RS15805 (LZP85_15805) - 3060473..3061132 (-) 660 WP_119543611.1 lipopolysaccharide assembly protein LapB -
  LZP85_RS15810 (LZP85_15810) mnmA 3061244..3062356 (-) 1113 WP_119543610.1 tRNA 2-thiouridine(34) synthase MnmA -
  LZP85_RS15815 (LZP85_15815) - 3062385..3063527 (-) 1143 WP_119543609.1 cysteine desulfurase family protein -
  LZP85_RS15820 (LZP85_15820) cymR 3063554..3063970 (-) 417 WP_025911725.1 cysteine metabolism transcriptional regulator CymR -
  LZP85_RS15825 (LZP85_15825) - 3064172..3065437 (+) 1266 WP_061784991.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88917.64 Da        Isoelectric Point: 4.9216

>NTDB_id=642378 LZP85_RS15800 WP_119543612.1 3058081..3060444(-) (recD2) [Priestia flexa strain DMP08]
MSEEVLNPLQPDEEKTYIKGTAIVTVFHNEENLYNVTRIRIKETNVSMDDKEAIVTGYFPRLNEDELYTFIGNFKEHPKF
GLQFQVEQFKKELPQSKQGVIQYLSSDLFNGIGKKTAENIVEALGERAIYRMLQDPAVLKKVSRLSADKAEKLIAQLREH
QGLEEVMVKLTDLGFGPQLSMKIFQAYKQEALEVIQTNPYQLVEDVQGIGFNRADELGRKLGLATNHPNRLRAGILYVIE
HECNQMGHVYVKAEQLYQKTGELLQKSRQEPLSEMDIIREIDALKEEKKIIIDDDKMYFPPLFYAEKGVVKAIGKLMAQT
EYEEQFPESEFLLALGELEERLGVQYAPSQREGIQKALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKD
EGFPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPINGKLLIVDEVSMVDLWLAHQLFKSLPASIQV
VLVGDEDQLPSVGPGQVLKDLLHSEAVPTVRLTDVYRQEEGSSIIDLAHEIKNGRLPSDLTNQQGDRSFIRCYGAQITDV
VKQVCDNAVKKGYTAKDIQVLAPMYKGPAGIDKMNEVLQELFNPASQQRRELKHGDVTYRVGDKVLQLVNQPDSNVFNGD
MGEIVSVFFAKENTEKQDMLVISFEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVT
RSKQFLILCGEEEAFQIGVNRNEDSVRQTNLQALLKEQLVDELEDPEVPFMKDANIGMENLTPYDFM

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=642378 LZP85_RS15800 WP_119543612.1 3058081..3060444(-) (recD2) [Priestia flexa strain DMP08]
ATGAGTGAGGAAGTTCTAAACCCTTTACAACCCGATGAAGAAAAAACGTACATAAAAGGCACGGCAATTGTCACGGTCTT
TCATAATGAAGAAAATTTGTATAACGTAACAAGAATTAGAATAAAAGAAACAAATGTATCCATGGACGATAAAGAAGCGA
TTGTTACGGGCTATTTCCCCCGTTTGAACGAAGATGAACTTTACACTTTTATTGGAAACTTTAAAGAGCATCCGAAATTT
GGCCTTCAGTTTCAAGTAGAGCAATTTAAAAAAGAGCTTCCCCAGTCAAAACAAGGGGTCATTCAGTACTTATCAAGTGA
TCTCTTTAACGGTATTGGTAAAAAAACCGCAGAAAATATTGTAGAAGCACTTGGTGAACGTGCAATTTATCGAATGCTAC
AAGACCCTGCGGTATTGAAAAAGGTGTCTAGGCTATCTGCTGATAAAGCAGAAAAGCTAATCGCTCAGCTGCGAGAGCAC
CAGGGGTTAGAAGAAGTAATGGTTAAGCTGACAGATTTGGGATTTGGTCCGCAGCTTTCCATGAAAATTTTCCAAGCTTA
TAAACAAGAGGCGCTAGAAGTGATTCAAACAAACCCCTATCAGCTTGTTGAAGATGTTCAAGGAATCGGCTTTAACCGAG
CGGATGAATTAGGAAGGAAGCTAGGGTTAGCAACCAACCATCCTAACCGGCTTCGAGCTGGAATTTTATACGTTATCGAG
CATGAATGCAATCAAATGGGACACGTCTACGTGAAAGCAGAGCAATTGTATCAGAAAACGGGAGAGCTGTTACAAAAAAG
TCGTCAAGAACCGTTATCAGAAATGGATATTATACGAGAGATTGATGCACTGAAAGAAGAGAAAAAAATTATTATTGATG
ACGATAAAATGTACTTCCCACCGCTTTTTTATGCTGAAAAAGGAGTCGTTAAAGCGATTGGTAAGCTAATGGCTCAAACA
GAGTATGAAGAGCAATTTCCTGAATCAGAATTTCTTCTAGCTCTAGGGGAGTTAGAAGAGCGTCTAGGCGTGCAGTATGC
ACCTTCGCAAAGAGAAGGAATTCAAAAAGCGCTTCTATCCCCAATGCTTTTGCTTACAGGAGGACCAGGTACCGGTAAAA
CAACAGTTATAAAGGGAATTGTTGAACTTTATGCAGAGCTTCATGGCTGTTCGCTAAATCCAGGGGATTATAAAAAAGAC
GAAGGATTTCCAGTGCTGCTTGTCGCTCCTACAGGTCGAGCTGCTAAACGGATGAGCGAGGCTACTGGACTGCCAGCGGT
GACAATCCACAGACTTTTAAAGTGGAATGGACAAGAAGGGTTTGACCACAATGAAGAAAATCCAATCAATGGTAAGTTAC
TGATTGTGGACGAGGTCTCTATGGTAGATTTATGGCTTGCTCACCAGCTCTTTAAATCACTTCCAGCTAGCATCCAAGTA
GTGCTTGTAGGTGATGAAGATCAATTACCTTCAGTTGGTCCTGGTCAGGTGTTGAAAGATTTATTACATTCTGAAGCTGT
TCCTACCGTACGATTAACAGACGTATATCGCCAAGAAGAAGGCTCATCTATCATTGATTTGGCTCATGAAATTAAAAACG
GACGTCTTCCATCCGATTTGACTAATCAGCAAGGCGATCGTTCCTTTATTCGTTGTTACGGAGCGCAAATTACAGATGTT
GTCAAACAAGTGTGCGACAATGCTGTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTGCTGGCTCCAATGTATAAAGG
TCCAGCGGGGATTGATAAAATGAATGAAGTACTGCAAGAATTATTTAATCCAGCCTCTCAACAGCGGAGAGAGTTAAAGC
ACGGAGATGTAACATATCGTGTAGGCGATAAGGTACTTCAGCTTGTAAATCAACCTGATAGTAATGTTTTTAATGGAGAT
ATGGGTGAGATTGTGTCTGTTTTTTTCGCAAAGGAAAACACGGAAAAGCAGGATATGCTTGTTATTTCATTCGAAGGAAA
TGAAGTAACCTATACGAAACAAGACTTTAATCAGATTACGCATGCGTACTGCTGCTCTATTCATAAATCACAAGGAAGCG
AGTTTCCGATTGTGGTGTTGCCTATTGTGAAAAGTTATTATCGCATGCTCCGACGGAACCTGCTTTATACTGCCGTTACG
CGGAGCAAGCAGTTCTTGATCTTATGTGGTGAAGAAGAAGCGTTTCAAATTGGCGTAAATCGTAACGAAGACAGCGTTCG
ACAGACCAATCTACAAGCCCTTCTCAAAGAGCAATTAGTTGATGAGTTAGAAGATCCTGAGGTGCCATTTATGAAAGATG
CAAATATTGGCATGGAAAACCTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

AAA domain (AAA_30)

(346-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

65.134

99.492

0.648