Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LZF93_RS09835 Genome accession   NZ_CP090414
Coordinates   2275447..2277276 (-) Length   609 a.a.
NCBI ID   WP_234146883.1    Uniprot ID   -
Organism   Bifidobacterium longum strain T1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270447..2282276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZF93_RS10530 - 2270727..2271104 (+) 378 WP_033889208.1 hypothetical protein -
  LZF93_RS09815 (LZF93_09815) rsmI 2271131..2272141 (-) 1011 WP_029679868.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LZF93_RS09825 (LZF93_09825) - 2272688..2274106 (-) 1419 WP_204385960.1 MFS transporter -
  LZF93_RS09830 (LZF93_09830) - 2274045..2275307 (+) 1263 WP_411908504.1 FAD:protein FMN transferase -
  LZF93_RS09835 (LZF93_09835) rcrQ 2275447..2277276 (-) 1830 WP_234146883.1 ABC transporter ATP-binding protein Regulator
  LZF93_RS09840 (LZF93_09840) rcrP 2277491..2279362 (-) 1872 WP_197309147.1 ABC transporter ATP-binding protein Regulator
  LZF93_RS09845 (LZF93_09845) - 2279613..2280143 (-) 531 WP_234146884.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66639.06 Da        Isoelectric Point: 6.3742

>NTDB_id=642188 LZF93_RS09835 WP_234146883.1 2275447..2277276(-) (rcrQ) [Bifidobacterium longum strain T1]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDARTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=642188 LZF93_RS09835 WP_234146883.1 2275447..2277276(-) (rcrQ) [Bifidobacterium longum strain T1]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGACTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTACAGTTCGGTTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
TGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCAACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATGCCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAGCTGCTGGCGGCGGGCGGTTTTTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.188

96.059

0.521