Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LY388_RS19875 Genome accession   NZ_CP090387
Coordinates   187083..187943 (-) Length   286 a.a.
NCBI ID   WP_148504799.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182083..192943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS06350 (LY388_06350) gspL 182341..183552 (+) 1212 WP_032471731.1 type II secretion system protein GspL -
  LY388_RS06355 (LY388_06355) - 183562..184059 (+) 498 WP_000661339.1 type II secretion system protein M -
  LY388_RS06360 (LY388_06360) - 184061..184819 (+) 759 WP_029627715.1 type II secretion system protein N -
  LY388_RS06365 (LY388_06365) cysQ 184871..185698 (-) 828 WP_033931432.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LY388_RS06370 (LY388_06370) nudE 185721..186269 (-) 549 WP_000095813.1 ADP compounds hydrolase NudE -
  LY388_RS06375 (LY388_06375) nfuA 186408..186995 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  LY388_RS19875 comF 187083..187943 (-) 861 WP_148504799.1 ComF family protein Machinery gene
  LY388_RS06390 (LY388_06390) bioH 187879..188640 (+) 762 WP_187379379.1 pimeloyl-ACP methyl ester esterase BioH -
  LY388_RS06395 (LY388_06395) - 188801..189271 (+) 471 WP_000961393.1 hypothetical protein -
  LY388_RS06400 (LY388_06400) - 189367..191688 (-) 2322 WP_234116132.1 Tex family protein -
  LY388_RS06405 (LY388_06405) greB 191933..192418 (+) 486 WP_071179340.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32499.41 Da        Isoelectric Point: 8.1652

>NTDB_id=641949 LY388_RS19875 WP_148504799.1 187083..187943(-) (comF) [Vibrio cholerae strain GXFL1-4]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTSVDQCGQCLGQPPPWRKLKCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=641949 LY388_RS19875 WP_148504799.1 187083..187943(-) (comF) [Vibrio cholerae strain GXFL1-4]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCTC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGAAGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCTACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACAATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGTACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388