Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   U722_RS08030 Genome accession   NC_023073
Coordinates   1649522..1650301 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens LFB112     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644522..1655301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS08010 (U722_08460) trmFO 1645209..1646516 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U722_RS08015 (U722_08465) xerC 1646586..1647503 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  U722_RS08020 (U722_08470) hslV 1647519..1648064 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  U722_RS08025 (U722_08475) hslU 1648081..1649484 (+) 1404 WP_024085299.1 HslU--HslV peptidase ATPase subunit -
  U722_RS08030 (U722_08480) codY 1649522..1650301 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  U722_RS08035 (U722_08485) flgB 1650655..1651044 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  U722_RS08040 (U722_08490) flgC 1651044..1651496 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  U722_RS08045 (U722_08495) fliE 1651507..1651827 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  U722_RS08050 (U722_08500) fliF 1651870..1653480 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  U722_RS08055 (U722_08505) fliG 1653493..1654509 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  U722_RS08060 (U722_08510) fliH 1654502..1655257 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=64191 U722_RS08030 WP_003154263.1 1649522..1650301(+) (codY) [Bacillus amyloliquefaciens LFB112]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=64191 U722_RS08030 WP_003154263.1 1649522..1650301(+) (codY) [Bacillus amyloliquefaciens LFB112]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment