Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LY257_RS07470 Genome accession   NZ_CP090367
Coordinates   1540520..1540801 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535520..1545801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS07450 (LY257_07395) - 1536245..1537585 (-) 1341 WP_001864262.1 COG3014 family protein -
  LY257_RS07460 (LY257_07405) comB4 1537892..1540255 (-) 2364 WP_000890513.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LY257_RS07465 (LY257_07410) comB3 1540257..1540520 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  LY257_RS07470 (LY257_07415) comB2 1540520..1540801 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  LY257_RS07475 (LY257_07420) - 1540947..1541774 (-) 828 WP_001154924.1 DUF5718 family protein -
  LY257_RS07480 (LY257_07425) - 1541864..1542916 (-) 1053 WP_000721206.1 MnmA/TRMU family protein -
  LY257_RS07485 (LY257_07430) dnaG 1542913..1544592 (-) 1680 WP_000601629.1 DNA primase -
  LY257_RS07490 (LY257_07435) groES 1544878..1545234 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=641765 LY257_RS07470 WP_001272690.1 1540520..1540801(-) (comB2) [Helicobacter pylori strain CCUG 17875]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=641765 LY257_RS07470 WP_001272690.1 1540520..1540801(-) (comB2) [Helicobacter pylori strain CCUG 17875]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1