Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LXN49_RS07865 Genome accession   NZ_CP090354
Coordinates   1587531..1588310 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain H31R-08     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582531..1593310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS07845 (LXN49_07845) trmFO 1583235..1584539 (+) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LXN49_RS07850 (LXN49_07850) xerC 1584602..1585519 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  LXN49_RS07855 (LXN49_07855) hslV 1585534..1586079 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  LXN49_RS07860 (LXN49_07860) hslU 1586096..1587496 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  LXN49_RS07865 (LXN49_07865) codY 1587531..1588310 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LXN49_RS07870 (LXN49_07870) flgB 1588599..1588988 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  LXN49_RS07875 (LXN49_07875) flgC 1588988..1589440 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  LXN49_RS07880 (LXN49_07880) fliE 1589452..1589769 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  LXN49_RS07885 (LXN49_07885) fliF 1589819..1591411 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  LXN49_RS07890 (LXN49_07890) fliG 1591423..1592439 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  LXN49_RS07895 (LXN49_07895) fliH 1592432..1593196 (+) 765 WP_208945818.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=641595 LXN49_RS07865 WP_007499612.1 1587531..1588310(+) (codY) [Bacillus safensis strain H31R-08]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=641595 LXN49_RS07865 WP_007499612.1 1587531..1588310(+) (codY) [Bacillus safensis strain H31R-08]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471