Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LVJ09_RS02780 Genome accession   NZ_CP090216
Coordinates   572490..574928 (+) Length   812 a.a.
NCBI ID   WP_274981864.1    Uniprot ID   -
Organism   Vagococcus lutrae strain VF20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567490..579928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ09_RS02750 (LVJ09_02745) - 568419..569555 (+) 1137 WP_248857106.1 CAP-associated domain-containing protein -
  LVJ09_RS02755 (LVJ09_02750) - 569557..569985 (+) 429 WP_274981863.1 YlbF family regulator -
  LVJ09_RS02760 (LVJ09_02755) - 569978..570262 (+) 285 WP_023606469.1 YlbG family protein -
  LVJ09_RS02765 (LVJ09_02760) rsmD 570350..570910 (+) 561 WP_023606470.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LVJ09_RS02770 (LVJ09_02765) coaD 570907..571410 (+) 504 WP_023606471.1 pantetheine-phosphate adenylyltransferase -
  LVJ09_RS02775 (LVJ09_02770) - 571426..572475 (+) 1050 WP_248848768.1 SepM family pheromone-processing serine protease -
  LVJ09_RS02780 (LVJ09_02775) recD2 572490..574928 (+) 2439 WP_274981864.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LVJ09_RS02785 (LVJ09_02780) - 574996..575946 (-) 951 WP_274981865.1 diacylglycerol/lipid kinase family protein -
  LVJ09_RS02790 (LVJ09_02785) - 576019..576903 (-) 885 WP_248855950.1 LysR family transcriptional regulator -
  LVJ09_RS02795 (LVJ09_02790) - 577089..578375 (+) 1287 WP_126760643.1 YeeE/YedE family protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 91277.08 Da        Isoelectric Point: 4.5636

>NTDB_id=641235 LVJ09_RS02780 WP_274981864.1 572490..574928(+) (recD2) [Vagococcus lutrae strain VF20]
MVESEKDLHHTPKIIGRIQAIFYQNPTNFYKVMLIEVEESEPSIDELEMVVTGNFGDMMEGESYQFSGQFVTHPKYGRQF
QVERYEQVKPTSANGLIDYLSGDNFPGIGKKTAEKLVDYFGEETIDVIMNDSERLDALDFLNKKRKDTIISGVKSNYGSE
KILIQLNEWGFGSQLAMTIFQKYQEQTLTLLEENPYRLIEDIEGIAFKKADKLAEHLNIAANAPERFQAAILTELLSYSL
SEGHTYIEAQVLLEKVVTLLESSRRYPVELSDVADQIIALIDLGKMQQEGTKLFHNSLFYAEWGVSHAIHRLLKRKQSID
YDEATILASIKQMETELGIAYGPSQKTALIEGVQSSFFILTGGPGTGKTTVINGLVRLFSELNELSLDINDYHNEVFPIL
LAAPTGRAAKRMSETTGLPAKTIHRLLGLTGQEMHPEEIANELEGSLLILDEMSMVDTWLANALFKAIPTNMQVIIVGDK
DQLPSVGPGQVLHDLLSIPMLPQCELTDIYRQEDGSSIIALAHAIKEGTLPTDFTRNQKDRSFIAGNTYQIEEMIRQIVV
KAAEKGFTASDIQVLAPMYRGPAGIDRLNKMLQEVLNPNESGRRKEVTWFETVYRIGDKVLQLVNVPENQVYNGDIGEIT
GIILAKEHEDKVDVLVVDFDGIEVEYPRNQWQQLTLAYCCSIHKSQGSEYPLVILPMVNGYYRMLQRNLLYTAITRSQER
LILLGELEAYETAVKHEGANRQTALKERIMAETFPSTTSLDTQSQEGSIPKEEIAREQLETQASFILTKELILSGAVDPM
IGMEGITPFDYI

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=641235 LVJ09_RS02780 WP_274981864.1 572490..574928(+) (recD2) [Vagococcus lutrae strain VF20]
ATGGTAGAAAGTGAAAAAGATTTACATCATACGCCTAAAATAATAGGACGGATTCAAGCCATCTTTTATCAAAATCCTAC
TAATTTTTATAAAGTGATGTTGATTGAAGTGGAAGAAAGCGAGCCGTCAATTGATGAATTAGAAATGGTTGTAACAGGAA
ATTTTGGCGATATGATGGAAGGAGAAAGCTACCAGTTTTCTGGACAGTTTGTCACACATCCTAAGTATGGCCGTCAATTC
CAAGTGGAACGTTATGAACAGGTAAAACCAACCAGTGCTAATGGTTTAATTGACTATTTATCTGGGGATAACTTTCCCGG
AATTGGAAAAAAAACAGCTGAAAAATTAGTAGATTATTTTGGCGAAGAAACAATCGATGTCATTATGAATGATTCTGAAA
GATTAGACGCGTTAGATTTTTTAAATAAAAAACGAAAAGATACGATTATATCGGGAGTTAAAAGTAATTACGGGTCAGAA
AAAATCCTTATTCAACTGAATGAATGGGGATTTGGTAGTCAATTAGCCATGACTATCTTTCAAAAGTATCAGGAACAAAC
ATTAACCCTCTTAGAAGAGAATCCTTATCGCTTGATTGAAGATATTGAAGGGATTGCGTTTAAAAAAGCTGATAAGTTAG
CAGAACATTTAAATATTGCCGCGAATGCACCAGAGCGTTTTCAAGCGGCTATTTTAACAGAGCTGCTGTCATATTCATTA
AGTGAAGGACACACGTATATTGAAGCGCAAGTATTATTAGAGAAAGTCGTAACACTGTTAGAATCATCACGACGTTATCC
GGTGGAGCTTAGTGACGTAGCCGATCAAATCATTGCGTTGATTGATTTAGGAAAGATGCAGCAAGAAGGAACAAAGCTCT
TTCATAACAGTTTATTCTATGCAGAATGGGGCGTTTCACATGCCATTCATCGCTTACTTAAACGTAAACAATCAATTGAT
TATGATGAAGCAACTATTTTAGCATCTATTAAGCAGATGGAGACGGAATTAGGAATTGCTTATGGCCCTTCGCAAAAGAC
AGCTTTGATTGAAGGCGTTCAGTCTTCTTTCTTTATCTTGACAGGTGGCCCTGGTACAGGGAAAACGACGGTTATTAATG
GCCTCGTCCGATTATTCTCAGAGCTTAATGAGCTTTCTTTAGATATCAATGATTATCATAATGAGGTCTTTCCTATCTTA
TTAGCAGCGCCGACTGGTCGGGCAGCAAAGCGAATGAGTGAAACGACTGGATTACCGGCGAAGACGATACATCGTTTGCT
AGGATTAACTGGACAAGAAATGCATCCAGAAGAAATTGCAAATGAATTAGAAGGTAGTTTGCTGATTTTAGATGAAATGT
CGATGGTCGATACGTGGTTGGCAAATGCACTATTTAAAGCGATACCTACCAATATGCAAGTGATTATAGTTGGAGATAAA
GACCAGCTGCCATCTGTTGGGCCCGGTCAGGTTTTACACGATTTACTATCGATTCCCATGCTACCTCAATGTGAGTTAAC
AGATATTTATCGACAAGAAGATGGTTCGTCAATTATTGCTTTAGCACATGCGATTAAAGAAGGGACGTTGCCTACTGATT
TTACTCGTAATCAGAAAGACCGTTCTTTTATTGCAGGCAACACGTATCAAATAGAAGAAATGATTCGTCAAATTGTGGTC
AAAGCTGCAGAAAAAGGTTTTACAGCTTCCGATATACAAGTTTTAGCACCAATGTATCGCGGACCAGCTGGCATTGACCG
ATTGAATAAAATGTTACAAGAAGTGTTAAATCCTAATGAAAGTGGTCGTCGTAAAGAAGTAACGTGGTTTGAAACTGTTT
ATCGAATTGGTGATAAGGTTCTTCAACTGGTTAATGTTCCGGAAAATCAAGTTTATAATGGCGATATTGGAGAAATTACT
GGTATCATCTTAGCGAAAGAGCACGAAGATAAAGTGGATGTCTTGGTAGTCGATTTTGATGGAATAGAGGTGGAATATCC
ACGTAATCAGTGGCAGCAACTCACACTTGCTTATTGCTGTTCTATTCATAAGTCACAAGGGAGTGAATATCCGCTTGTGA
TTTTACCAATGGTTAATGGGTATTATCGAATGTTACAGCGTAATTTATTGTATACGGCGATTACGCGTAGTCAAGAGCGT
TTGATTTTATTGGGCGAACTGGAAGCTTATGAAACAGCTGTCAAGCATGAAGGTGCTAATCGTCAAACTGCTTTGAAAGA
ACGGATTATGGCAGAAACATTTCCGAGTACAACGTCACTTGATACCCAATCTCAAGAAGGAAGTATTCCTAAAGAAGAAA
TAGCTCGAGAACAACTTGAAACGCAAGCGTCATTTATCTTAACAAAAGAGTTAATTCTTTCTGGTGCCGTTGACCCTATG
ATTGGAATGGAAGGTATTACACCGTTTGATTACATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-659)

AAA domain (AAA_30)

(342-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.63

99.754

0.495