Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LXH20_RS08205 Genome accession   NZ_CP090150
Coordinates   1628212..1628991 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BR-01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623212..1633991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXH20_RS08185 (LXH20_08185) trmFO 1623899..1625206 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LXH20_RS08190 (LXH20_08190) xerC 1625276..1626193 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  LXH20_RS08195 (LXH20_08195) hslV 1626209..1626754 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  LXH20_RS08200 (LXH20_08200) hslU 1626771..1628174 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  LXH20_RS08205 (LXH20_08205) codY 1628212..1628991 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LXH20_RS08210 (LXH20_08210) flgB 1629345..1629734 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LXH20_RS08215 (LXH20_08215) flgC 1629734..1630186 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  LXH20_RS08220 (LXH20_08220) fliE 1630197..1630517 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LXH20_RS08225 (LXH20_08225) fliF 1630560..1632170 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  LXH20_RS08230 (LXH20_08230) fliG 1632183..1633199 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LXH20_RS08235 (LXH20_08235) fliH 1633192..1633947 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=640892 LXH20_RS08205 WP_003154263.1 1628212..1628991(+) (codY) [Bacillus velezensis strain BR-01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=640892 LXH20_RS08205 WP_003154263.1 1628212..1628991(+) (codY) [Bacillus velezensis strain BR-01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471