Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LXE94_RS12440 Genome accession   NZ_CP090125
Coordinates   2334976..2335359 (-) Length   127 a.a.
NCBI ID   WP_041334965.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2333056..2334294 2334976..2335359 flank 682


Gene organization within MGE regions


Location: 2333056..2335359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS12430 (LXE94_12405) spoIITA 2334350..2334529 (-) 180 WP_014480252.1 YqzE family protein -
  LXE94_RS12435 (LXE94_12410) comGG 2334601..2334975 (-) 375 WP_144453292.1 ComG operon protein ComGG Machinery gene
  LXE94_RS12440 (LXE94_12415) comGF 2334976..2335359 (-) 384 WP_041334965.1 ComG operon protein ComGF Machinery gene

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14319.42 Da        Isoelectric Point: 6.2112

>NTDB_id=640701 LXE94_RS12440 WP_041334965.1 2334976..2335359(-) (comGF) [Bacillus subtilis strain Bs96]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADFVNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=640701 LXE94_RS12440 WP_041334965.1 2334976..2335359(-) (comGF) [Bacillus subtilis strain Bs96]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCAATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATTTTGTAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

97.638

100

0.976