Detailed information NTG0640691

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM52_RS24730
• Genome accession: NZ_CP107120
• Coordinates: 5026778..5027803 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain S12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5021778..5032803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM52_RS24710 (OGM52_24685)	metJ	5022963..5023280 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
OGM52_RS24715 (OGM52_24690)	yiiX	5023340..5023948 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM52_RS24720 (OGM52_24695)	rpmE	5024009..5024221 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM52_RS24725 (OGM52_24700)	priA	5024424..5026622 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM52_RS24730 (OGM52_24705)	cytR	5026778..5027803 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM52_RS24735 (OGM52_24710)	ftsN	5027895..5028854 (+)	960	WP_000068834.1	cell division protein FtsN	-
OGM52_RS24740 (OGM52_24715)	hslV	5028947..5029477 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM52_RS24745 (OGM52_24720)	hslU	5029487..5030818 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM52_RS24750 (OGM52_24725)	menA	5030885..5031811 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM52_RS24755 (OGM52_24730)	rraA	5031904..5032389 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM52_RS24760 (OGM52_24735)	zapB	5032474..5032719 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=640691 OGM52_RS24730 WP_000644908.1 5026778..5027803(+) (cytR) [Escherichia coli strain S12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=640691 OGM52_RS24730 WP_000644908.1 5026778..5027803(+) (cytR) [Escherichia coli strain S12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625