Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LXE94_RS08820 Genome accession   NZ_CP090125
Coordinates   1687913..1688692 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain Bs96     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682913..1693692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS08800 (LXE94_08780) trmFO 1683606..1684913 (+) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LXE94_RS08805 (LXE94_08785) xerC 1684981..1685895 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  LXE94_RS08810 (LXE94_08790) clpQ 1685908..1686453 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  LXE94_RS08815 (LXE94_08795) hslU 1686470..1687873 (+) 1404 WP_041335959.1 HslU--HslV peptidase ATPase subunit -
  LXE94_RS08820 (LXE94_08800) codY 1687913..1688692 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LXE94_RS08825 (LXE94_08805) flgB 1689072..1689461 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  LXE94_RS08830 (LXE94_08810) flgC 1689461..1689913 (+) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  LXE94_RS08835 (LXE94_08815) fliE 1689924..1690244 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  LXE94_RS08840 (LXE94_08820) fliF 1690290..1691900 (+) 1611 WP_257986618.1 flagellar basal-body MS-ring/collar protein FliF -
  LXE94_RS08845 (LXE94_08825) fliG 1691913..1692929 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  LXE94_RS08850 (LXE94_08830) fliH 1692922..1693674 (+) 753 WP_186302386.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=640691 LXE94_RS08820 WP_003220850.1 1687913..1688692(+) (codY) [Bacillus subtilis strain Bs96]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=640691 LXE94_RS08820 WP_003220850.1 1687913..1688692(+) (codY) [Bacillus subtilis strain Bs96]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467