Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LW858_RS17535 Genome accession   NZ_CP090081
Coordinates   3450087..3450866 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3416061..3471949 3450087..3450866 within 0


Gene organization within MGE regions


Location: 3416061..3471949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS17385 (LW858_17385) - 3416232..3417902 (-) 1671 WP_000823096.1 ribonuclease J -
  LW858_RS17390 (LW858_17390) dapA 3418639..3419517 (-) 879 WP_000564763.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LW858_RS17395 (LW858_17395) dapG 3419529..3420761 (-) 1233 WP_000692459.1 aspartate kinase -
  LW858_RS17400 (LW858_17400) asd 3420785..3421831 (-) 1047 WP_000414846.1 aspartate-semialdehyde dehydrogenase -
  LW858_RS17405 (LW858_17405) dpaB 3421982..3422581 (-) 600 WP_000053596.1 dipicolinate synthase subunit B -
  LW858_RS17410 (LW858_17410) dpaA 3422578..3423480 (-) 903 WP_000954739.1 dipicolinic acid synthetase subunit A -
  LW858_RS17415 (LW858_17415) - 3423651..3423902 (-) 252 WP_001239759.1 YlmC/YmxH family sporulation protein -
  LW858_RS17420 (LW858_17420) - 3424036..3425277 (-) 1242 WP_000592996.1 pitrilysin family protein -
  LW858_RS17425 (LW858_17425) - 3425364..3426263 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  LW858_RS17430 (LW858_17430) pnp 3426415..3428553 (-) 2139 WP_233935214.1 polyribonucleotide nucleotidyltransferase -
  LW858_RS17435 (LW858_17435) rpsO 3428714..3428983 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  LW858_RS17440 (LW858_17440) ribF 3429084..3430055 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  LW858_RS17445 (LW858_17445) truB 3430099..3431022 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  LW858_RS17450 (LW858_17450) rbfA 3431109..3431465 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  LW858_RS17455 (LW858_17455) - 3431481..3431762 (-) 282 WP_000582363.1 DUF503 family protein -
  LW858_RS17460 (LW858_17460) infB 3431759..3433819 (-) 2061 WP_233935216.1 translation initiation factor IF-2 -
  LW858_RS17465 (LW858_17465) - 3433824..3434135 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  LW858_RS17470 (LW858_17470) - 3434136..3434408 (-) 273 WP_000071127.1 YlxR family protein -
  LW858_RS17475 (LW858_17475) nusA 3434420..3435526 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  LW858_RS17480 (LW858_17480) rimP 3435544..3436014 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  LW858_RS17485 (LW858_17485) - 3436351..3440652 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  LW858_RS17490 (LW858_17490) - 3440777..3442477 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  LW858_RS17495 (LW858_17495) rseP 3442587..3443843 (-) 1257 WP_001090244.1 RIP metalloprotease RseP -
  LW858_RS17500 (LW858_17500) dxr 3443861..3445003 (-) 1143 WP_088321980.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  LW858_RS17505 (LW858_17505) cdsA 3445027..3445818 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  LW858_RS17510 (LW858_17510) uppS 3445836..3446612 (-) 777 WP_000971296.1 isoprenyl transferase -
  LW858_RS17515 (LW858_17515) frr 3446698..3447255 (-) 558 WP_000531501.1 ribosome recycling factor -
  LW858_RS17520 (LW858_17520) pyrH 3447258..3447980 (-) 723 WP_000042668.1 UMP kinase -
  LW858_RS17525 (LW858_17525) tsf 3448047..3448934 (-) 888 WP_001018578.1 translation elongation factor Ts -
  LW858_RS17530 (LW858_17530) rpsB 3449038..3449739 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  LW858_RS33785 - 3449926..3450048 (-) 123 WP_282082056.1 hypothetical protein -
  LW858_RS17535 (LW858_17535) codY 3450087..3450866 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LW858_RS17540 (LW858_17540) hslU 3450944..3452335 (-) 1392 WP_233935217.1 ATP-dependent protease ATPase subunit HslU -
  LW858_RS17545 (LW858_17545) hslV 3452358..3452900 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  LW858_RS17550 (LW858_17550) xerC 3452943..3453842 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  LW858_RS17555 (LW858_17555) trmFO 3453908..3455212 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LW858_RS17560 (LW858_17560) topA 3455261..3457339 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  LW858_RS17565 (LW858_17565) dprA 3457484..3458353 (-) 870 WP_000818060.1 DNA-processing protein DprA -
  LW858_RS17570 (LW858_17570) sucD 3458442..3459344 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  LW858_RS17575 (LW858_17575) sucC 3459364..3460524 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  LW858_RS17580 (LW858_17580) - 3460719..3461492 (-) 774 WP_001194265.1 ribonuclease HII -
  LW858_RS17585 (LW858_17585) ylqF 3461549..3462439 (-) 891 WP_233935218.1 ribosome biogenesis GTPase YlqF -
  LW858_RS17590 (LW858_17590) lepB 3462460..3463011 (-) 552 WP_000711853.1 signal peptidase I -
  LW858_RS17595 (LW858_17595) rplS 3463113..3463457 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  LW858_RS17600 (LW858_17600) trmD 3463604..3464338 (-) 735 WP_074047428.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LW858_RS17605 (LW858_17605) rimM 3464338..3464853 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  LW858_RS17610 (LW858_17610) - 3464975..3465202 (-) 228 WP_000737401.1 KH domain-containing protein -
  LW858_RS17615 (LW858_17615) rpsP 3465217..3465489 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  LW858_RS17620 (LW858_17620) ffh 3465591..3466940 (-) 1350 WP_233935219.1 signal recognition particle protein -
  LW858_RS17625 (LW858_17625) - 3466953..3467285 (-) 333 WP_000891062.1 putative DNA-binding protein -
  LW858_RS17630 (LW858_17630) ftsY 3467419..3468408 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=640605 LW858_RS17535 WP_000421290.1 3450087..3450866(-) (codY) [Bacillus cereus strain CPT56D-587-MTF]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=640605 LW858_RS17535 WP_000421290.1 3450087..3450866(-) (codY) [Bacillus cereus strain CPT56D-587-MTF]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459