Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA20_RS04920 Genome accession   NZ_CP107064
Coordinates   1013983..1014708 (+) Length   241 a.a.
NCBI ID   WP_014604095.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008983..1019708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS04890 (PALA20_00967) - 1009103..1009981 (-) 879 WP_003084817.1 5-oxoprolinase subunit B family protein -
  PALA20_RS04895 (PALA20_00968) - 1009983..1011359 (-) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA20_RS04900 (PALA20_00969) - 1011370..1011618 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA20_RS04905 (PALA20_00970) - 1011695..1012453 (-) 759 WP_003084810.1 5-oxoprolinase subunit PxpA -
  PALA20_RS04910 (PALA20_00971) - 1012571..1013497 (+) 927 WP_003129068.1 LysR family transcriptional regulator -
  PALA20_RS04915 (PALA20_00972) - 1013551..1013844 (+) 294 WP_003084806.1 hypothetical protein -
  PALA20_RS04920 (PALA20_00973) comF 1013983..1014708 (+) 726 WP_014604095.1 ComF family protein Machinery gene
  PALA20_RS04925 (PALA20_00974) - 1014750..1015070 (+) 321 WP_003084799.1 YfiM family lipoprotein -
  PALA20_RS04930 (PALA20_00975) - 1015138..1015896 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA20_RS04935 (PALA20_00976) - 1015958..1016932 (+) 975 WP_023098431.1 serine/threonine protein kinase -
  PALA20_RS04940 (PALA20_00977) rarD 1017135..1018031 (+) 897 WP_003084792.1 EamA family transporter RarD -
  PALA20_RS04945 (PALA20_00978) - 1018721..1019236 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26982.50 Da        Isoelectric Point: 10.3093

>NTDB_id=640353 PALA20_RS04920 WP_014604095.1 1013983..1014708(+) (comF) [Pseudomonas aeruginosa strain PALA20]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=640353 PALA20_RS04920 WP_014604095.1 1013983..1014708(+) (comF) [Pseudomonas aeruginosa strain PALA20]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382