Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LV497_RS00665 Genome accession   NZ_CP090007
Coordinates   152331..153170 (-) Length   279 a.a.
NCBI ID   WP_245084875.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 147331..158170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS00650 (LV497_00650) - 148381..149040 (-) 660 WP_084914485.1 response regulator transcription factor -
  LV497_RS00655 (LV497_00655) - 149076..149900 (-) 825 WP_245084872.1 TraX family protein -
  LV497_RS00660 (LV497_00660) topA 150017..152161 (-) 2145 WP_195187998.1 type I DNA topoisomerase -
  LV497_RS00665 (LV497_00665) dprA 152331..153170 (-) 840 WP_245084875.1 DNA-processing protein DprA Machinery gene
  LV497_RS00670 (LV497_00670) - 153237..154157 (-) 921 WP_070476068.1 ROK family protein -
  LV497_RS00675 (LV497_00675) - 154164..154934 (-) 771 WP_227071942.1 ribonuclease HII -
  LV497_RS00680 (LV497_00680) ylqF 154921..155775 (-) 855 WP_070476072.1 ribosome biogenesis GTPase YlqF -
  LV497_RS00685 (LV497_00685) - 155904..156593 (-) 690 WP_013990509.1 XRE family transcriptional regulator -
  LV497_RS00690 (LV497_00690) - 156688..157203 (-) 516 WP_013990508.1 transcription repressor NadR -
  LV497_RS00695 (LV497_00695) - 157226..157753 (-) 528 WP_002883896.1 ECF transporter S component -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31207.16 Da        Isoelectric Point: 8.8599

>NTDB_id=640090 LV497_RS00665 WP_245084875.1 152331..153170(-) (dprA) [Streptococcus salivarius strain SALI-10]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEKYKSLDIKQLKEQFDRFPTLSIFDKEYP
IELKHTYNPPVLLYYQGNLDLLSKPKLAVVGARKCSETGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGNTI
AVIGTGLDVYYPKENKALQGYMAKNHLVLSEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSDGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=640090 LV497_RS00665 WP_245084875.1 152331..153170(-) (dprA) [Streptococcus salivarius strain SALI-10]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATATTAAATATTTTGGACTATCAAAA
GACTCAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCCGTTCTTTTTATGGAAAAGT
ATAAGAGTTTAGATATTAAGCAACTCAAAGAACAATTCGACCGTTTTCCTACGTTATCGATTTTTGATAAAGAATATCCT
ATTGAGCTGAAGCATACCTATAATCCTCCTGTTCTCCTTTATTATCAGGGGAATCTTGATTTACTGAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGTTCTGAAACAGGCAAACAGTCCGTTCGAAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGATTGGCGCGTGGGATTGATACTTGTGCGCATATGGAGGCCTTGAAAAATAAGGGGAACACCATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCTAAAGAAAATAAAGCTTTGCAGGGCTATATGGCAAAAAATCATTT
AGTTCTTTCAGAATATGGACCAGGTGAACAGCCTCTCAAGTATCACTTTCCTGAACGCAATCGGATAATTTCTGGATTGT
GTCAAGGGGTTATGGTGGTTGAAGCTAAGCTTCGTTCGGGGAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGAAGA
GATGTTTTCGCCATACCTGGAAATATTTTAGACGGAAAATCGGATGGATGTCATCACTTGATTCAAGAGGGCGCAAAGTG
CATCACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

72.043

100

0.72
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis SK321

63.309

99.642

0.631
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

62.95

99.642

0.627
  dprA Lactococcus lactis subsp. cremoris KW2

60.072

99.642

0.599
  dprA Latilactobacillus sakei subsp. sakei 23K

41.313

92.832

0.384
  dprA Staphylococcus aureus N315

41.7

88.53

0.369
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75.269

0.362
  dprA Acinetobacter baumannii D1279779

44.69

81.004

0.362
  dprA Acinetobacter baumannii strain A118

44.69

81.004

0.362