Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LWC06_RS08855 Genome accession   NZ_CP090006
Coordinates   1678063..1680375 (+) Length   770 a.a.
NCBI ID   WP_233881072.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain ASH15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673063..1685375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWC06_RS08830 - 1673146..1674423 (-) 1278 WP_060678368.1 replication-associated recombination protein A -
  LWC06_RS08835 cymR 1674566..1674985 (+) 420 WP_019377847.1 cysteine metabolism transcriptional regulator CymR -
  LWC06_RS08840 - 1675091..1676233 (+) 1143 WP_233881071.1 cysteine desulfurase family protein -
  LWC06_RS08845 mnmA 1676250..1677365 (+) 1116 WP_019377849.1 tRNA 2-thiouridine(34) synthase MnmA -
  LWC06_RS08850 - 1677381..1678043 (+) 663 WP_160948762.1 tetratricopeptide repeat protein -
  LWC06_RS08855 recD2 1678063..1680375 (+) 2313 WP_233881072.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LWC06_RS08860 - 1680449..1680637 (+) 189 WP_019377852.1 hypothetical protein -
  LWC06_RS08865 - 1680686..1681753 (+) 1068 WP_019377853.1 AI-2E family transporter -
  LWC06_RS08870 alaS 1682059..1684698 (+) 2640 WP_071648856.1 alanine--tRNA ligase -
  LWC06_RS08875 - 1684860..1685126 (+) 267 WP_019377855.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 87076.55 Da        Isoelectric Point: 5.0851

>NTDB_id=640068 LWC06_RS08855 WP_233881072.1 1678063..1680375(+) (recD2) [Virgibacillus halodenitrificans strain ASH15]
MDMEKQSIAEQGYVKGELLHTIFHNEAEHFSIAKIKVIETNEDFKEKEIIAKGYFSNLQEQTAYLFYGLFENHPKFGLQY
RVTSYKTYIPDTTEGLIAYLSSDLFYGIGKKTAGKIVQHLGENAVSKILNDRNVLTGVPGLNKDTADSLAQSLQENQGFE
HIVVYLAKYNIGLKMAQKIYQEYKEDAITILEEDPYQYVFDIEGFGFQTADQIAGQRGLSPTHPNRIGAGCIYTLQKSMQ
DGHVFLPLSVCVERVFDLLSAHSLSSDIITERLKELNTTKSVIILEDRVYLPSLYYAEDGFASQLNRIISKSIEDETPLA
ELMKIIGDIEETEILSYGKEQFSAINQAVHSKVLILTGGPGTGKTTVIKGIIKAFSTIHNLSLDPQDYKDKSEFPFILTA
PTGRAAKRLTESTGLPAVTIHRLLGWDGKSGFNKTENEQLSGRFLIIDEFSMVDIWLANHLFKAIPEDMQVLIVGDEDQL
PSVGPGQVLTDLLASDVLPYVKLTDVYRQKEGSKIIQLAHQIKNNALIQLENDKDFSYIPCYENQMIEVVTKIISKAVSK
GIDVKDIQVLAPMYRSLAGITTINRELQQLINPRDKRKREVKIADTIFRKGDKVIQLVNQPEDNVFNGDIGEVVAIFRED
ENTDNVEQLVVLFDEKEVVYERKDYVNIMHAYCISIHKSQGSEFPIVIMPVVSAYRRMLRKNLLYTAITRSKQSLIICGE
QDAFLKGVQTMDTNKRYTTLKEQLLERVQTQKTLLEEPVAEDDISPYDFM

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=640068 LWC06_RS08855 WP_233881072.1 1678063..1680375(+) (recD2) [Virgibacillus halodenitrificans strain ASH15]
ATGGATATGGAAAAACAATCGATAGCTGAGCAAGGTTATGTGAAAGGCGAACTTTTGCATACAATTTTTCATAACGAAGC
AGAGCATTTCTCAATTGCTAAAATTAAAGTGATTGAAACAAATGAAGACTTCAAAGAAAAAGAAATAATAGCCAAAGGGT
ATTTTTCAAATCTACAGGAGCAAACAGCTTATCTTTTCTATGGTCTTTTTGAAAATCATCCTAAATTCGGGCTTCAGTAC
CGGGTCACGTCTTATAAAACTTATATTCCGGACACAACAGAAGGTTTAATTGCTTATTTATCGAGTGATCTATTTTACGG
TATCGGAAAGAAAACTGCTGGTAAAATCGTTCAGCATTTAGGAGAGAATGCAGTTTCGAAGATCTTGAATGACCGTAATG
TTTTAACTGGTGTGCCAGGATTAAATAAAGACACTGCAGATTCACTTGCTCAGAGCCTTCAGGAAAATCAAGGCTTTGAG
CATATTGTTGTATATTTGGCAAAATATAATATTGGATTAAAGATGGCACAAAAAATCTATCAAGAATATAAAGAGGATGC
GATAACCATTCTTGAGGAAGATCCTTACCAATATGTTTTCGATATAGAGGGATTTGGATTTCAAACTGCAGATCAAATAG
CAGGTCAAAGAGGACTTTCACCTACTCATCCAAATCGTATCGGTGCTGGTTGTATATATACATTACAAAAAAGTATGCAG
GATGGTCATGTGTTTTTACCCTTATCTGTCTGTGTTGAGAGAGTTTTTGATCTGTTATCTGCTCATTCCCTTTCTAGCGA
TATTATTACAGAAAGGTTAAAAGAATTAAATACAACTAAATCTGTTATTATTCTAGAGGACCGAGTTTACTTACCTTCTC
TATATTACGCTGAAGATGGGTTTGCTTCCCAGCTGAATCGAATTATAAGTAAATCTATTGAAGATGAAACACCTCTTGCT
GAATTGATGAAAATTATCGGTGATATAGAGGAAACAGAAATTTTAAGCTATGGGAAGGAACAGTTTTCAGCTATAAACCA
GGCTGTTCATTCAAAAGTGTTGATACTTACAGGTGGCCCAGGGACGGGGAAAACAACGGTTATTAAAGGGATAATTAAGG
CTTTTTCCACTATCCATAATCTTTCTCTTGATCCACAGGATTATAAAGATAAGTCTGAATTTCCATTTATACTGACAGCC
CCTACCGGTCGTGCTGCCAAAAGACTTACAGAATCAACCGGCCTACCTGCAGTAACAATACACAGATTACTGGGATGGGA
TGGGAAAAGTGGATTTAATAAGACAGAGAACGAGCAATTAAGTGGCAGATTTTTAATCATTGATGAGTTTTCTATGGTAG
ATATCTGGCTCGCTAATCATTTATTTAAAGCAATTCCTGAAGACATGCAAGTATTAATAGTTGGTGATGAGGATCAATTG
CCTTCTGTAGGTCCTGGTCAAGTGTTAACAGATTTGTTAGCAAGTGACGTGCTACCATATGTGAAATTGACGGATGTATA
TCGACAAAAAGAAGGTTCGAAGATTATTCAGCTTGCACATCAGATTAAGAATAATGCGCTAATTCAACTAGAAAATGATA
AAGACTTTAGTTATATCCCTTGTTACGAAAATCAAATGATTGAAGTCGTTACAAAGATTATTTCCAAGGCTGTCTCCAAA
GGGATTGATGTTAAAGATATTCAAGTCCTTGCGCCAATGTATCGCTCTCTTGCTGGAATTACCACGATTAATAGAGAACT
CCAACAATTAATTAATCCTAGAGACAAGAGAAAAAGAGAAGTAAAGATTGCTGATACTATATTCCGAAAAGGAGATAAGG
TGATCCAGCTTGTAAATCAACCAGAAGACAATGTATTTAACGGAGATATCGGGGAAGTTGTAGCTATTTTTAGAGAAGAT
GAAAATACGGATAATGTGGAGCAACTAGTAGTTCTATTTGATGAAAAAGAAGTAGTTTATGAGCGTAAAGATTATGTTAA
TATTATGCATGCATATTGTATATCGATTCATAAATCTCAAGGAAGTGAATTCCCTATCGTAATTATGCCCGTAGTTTCTG
CATATCGCCGTATGTTAAGAAAGAACTTACTTTACACCGCAATTACCAGAAGTAAACAATCACTTATTATATGTGGTGAA
CAAGACGCATTCCTGAAAGGAGTGCAAACAATGGATACGAATAAACGGTATACAACATTAAAAGAACAATTATTGGAAAG
AGTACAAACTCAAAAAACTCTGTTAGAGGAACCGGTAGCAGAAGATGACATTTCTCCGTATGATTTTATGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(337-532)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.235

100

0.501