Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LS684_RS15240 Genome accession   NZ_CP089997
Coordinates   3000166..3002532 (-) Length   788 a.a.
NCBI ID   WP_233807183.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2995166..3007532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS15225 (LS684_15225) dtd 2996238..2996678 (-) 441 WP_233807177.1 D-aminoacyl-tRNA deacylase -
  LS684_RS15230 (LS684_15230) - 2996690..2998885 (-) 2196 WP_233807179.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LS684_RS15235 (LS684_15235) - 2999663..3000175 (-) 513 WP_233807181.1 adenine phosphoribosyltransferase -
  LS684_RS15240 (LS684_15240) recJ 3000166..3002532 (-) 2367 WP_233807183.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LS684_RS15245 (LS684_15245) - 3002884..3003207 (-) 324 WP_233807185.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  LS684_RS15250 (LS684_15250) - 3003240..3004139 (-) 900 WP_233807187.1 cation diffusion facilitator family transporter -
  LS684_RS15255 (LS684_15255) secDF 3004277..3006538 (-) 2262 WP_233807189.1 protein translocase subunit SecDF -
  LS684_RS15260 (LS684_15260) - 3006748..3007044 (-) 297 WP_233807191.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88859.64 Da        Isoelectric Point: 5.1465

>NTDB_id=639918 LS684_RS15240 WP_233807183.1 3000166..3002532(-) (recJ) [Cytobacillus spongiae strain CY-G]
MLKSRTRWNVRQSNTETVDKLVAELNITPLVASLLVNRGIDTVEEARYFLFDNQLDFHDPFLLTGMDHAVARIKEAIEKQ
EPIMIFGDYDADGVTSTTVMMKTLTDLGANVQFYIPNRFTEGYGPNEAAFTYAAESGIQLIITVDTGISALHEANVAKDL
GVDLIITDHHEPGPMLPEALAIIHPKLEGSSYPFKELAGVGVAFKLSHALYGKVPEHLLEIAVIGTIADLVSLTGENRLI
AKRGLKKLRTTNNIGLKALFKQTKVEMDKIDEETIGFLVAPRINAVGRLESADPAVHLLLTDDPYEAETLAEEIDGLNKE
RQDIVSKIAEEAIQEVEEKYPASEHPVLVIGKVGWNAGVIGIVASRLVEKYYRPIIVLSFDEEKNQAKGSARSIAGFDLF
KNLSTCRDILPHFGGHPMAAGMTLKLDDVDELRSRLNDLAKEQLNENDFIPVTDVDGQFALEDIHLSALEELQMLAPYGM
NNPKPRIIINDTHLSTIRKIGSNQTHLKVTLSANGATLDGVGFGLGHLCDHISPFSKLSVVGELSINEWNNIRKPQLFLH
DLTVKEWQLFDYRGMKQLGKFKDMIPKNETIWVIFNKENYQPLQNLLKEELVLIETIDEARAMIIDHQSVILVDLPSSED
VLKQLVANKKPTRIYTHFYKEESDFFSTIPTRDHFKWFYAFLAKKSPFDLKRYGDDLAKHKGWSRETIDFMSKVFFELDF
VKISNGIISLDTSASKKDLNASPTYQRKQAQYALENELLYSSFQQLKNWFDQHIQGSVMIEEEMKEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=639918 LS684_RS15240 WP_233807183.1 3000166..3002532(-) (recJ) [Cytobacillus spongiae strain CY-G]
ATGTTAAAATCAAGAACACGATGGAATGTTCGACAATCGAATACTGAGACAGTCGATAAACTCGTTGCAGAATTAAACAT
CACGCCTCTTGTTGCATCGTTACTTGTGAATCGCGGAATAGATACCGTTGAAGAAGCACGGTATTTTTTGTTTGACAACC
AACTTGATTTCCATGATCCTTTTTTACTAACTGGAATGGATCATGCAGTTGCGCGAATTAAAGAGGCGATCGAAAAGCAA
GAGCCTATTATGATTTTTGGAGACTATGATGCAGATGGTGTAACAAGTACCACTGTTATGATGAAAACACTTACAGACCT
AGGAGCGAATGTTCAATTTTATATACCTAATCGGTTTACAGAAGGATATGGCCCAAATGAAGCAGCCTTCACTTACGCTG
CAGAAAGTGGAATACAACTGATTATTACGGTTGATACAGGTATATCTGCATTACACGAAGCAAACGTAGCAAAAGATCTT
GGGGTTGACCTGATCATTACAGACCATCATGAGCCAGGTCCCATGTTGCCAGAAGCTTTGGCGATCATTCACCCAAAGCT
TGAAGGTAGCTCCTATCCGTTTAAAGAGCTCGCTGGTGTAGGGGTAGCATTTAAGCTTTCTCATGCACTATATGGAAAAG
TACCCGAGCATTTATTGGAGATTGCCGTAATTGGTACCATTGCTGACCTCGTTTCATTAACTGGAGAAAACCGATTAATT
GCTAAACGCGGTTTGAAAAAATTAAGAACAACAAACAATATCGGGCTTAAAGCTTTGTTTAAACAAACAAAGGTAGAGAT
GGACAAGATAGACGAAGAAACAATTGGTTTCTTAGTTGCTCCAAGAATTAATGCGGTGGGTCGTTTGGAAAGTGCGGATC
CTGCTGTTCATTTACTACTGACTGATGACCCATATGAAGCAGAGACACTTGCAGAAGAGATAGATGGCCTAAACAAAGAA
AGACAGGACATCGTGAGTAAAATTGCCGAGGAAGCTATTCAAGAGGTGGAAGAGAAGTATCCAGCTTCAGAGCACCCTGT
ATTAGTCATCGGTAAAGTTGGATGGAACGCAGGTGTGATTGGAATTGTTGCTTCAAGATTGGTGGAAAAATACTACAGGC
CAATAATTGTACTTAGCTTTGATGAAGAAAAAAATCAAGCAAAAGGGTCTGCTCGTAGTATTGCTGGCTTTGATCTATTT
AAAAATCTATCAACATGCCGTGATATCCTTCCTCATTTCGGTGGACATCCAATGGCAGCTGGGATGACTCTCAAACTGGA
TGATGTGGACGAGCTAAGGAGCCGCCTTAATGATCTTGCAAAAGAGCAACTAAACGAGAATGACTTCATTCCAGTAACGG
ATGTGGATGGTCAATTTGCATTAGAGGACATTCACTTATCTGCATTAGAGGAATTACAAATGCTTGCTCCGTATGGAATG
AATAATCCAAAACCACGAATAATAATAAATGATACTCATTTATCAACGATTCGAAAAATTGGTTCAAATCAAACACATTT
GAAAGTAACGCTTTCAGCAAATGGGGCTACCCTTGATGGAGTCGGCTTTGGACTAGGTCATCTATGCGATCATATTTCGC
CATTTTCGAAGCTGTCGGTTGTGGGCGAGCTCTCAATTAATGAATGGAATAACATTCGGAAGCCGCAATTATTTCTTCAT
GATTTAACGGTAAAAGAATGGCAGCTTTTTGACTATCGCGGAATGAAACAGCTGGGGAAATTTAAAGATATGATTCCCAA
AAATGAAACGATTTGGGTTATTTTTAATAAAGAGAATTATCAACCATTGCAAAATCTTCTTAAAGAAGAACTTGTATTGA
TAGAAACAATAGATGAAGCAAGAGCGATGATAATTGATCATCAATCAGTCATTCTTGTTGACTTACCTTCATCAGAAGAT
GTCTTGAAACAATTGGTGGCGAATAAGAAGCCTACAAGAATTTACACACATTTTTATAAAGAAGAAAGTGATTTCTTCAG
CACGATACCAACTAGAGATCACTTTAAATGGTTCTATGCCTTTTTAGCAAAAAAATCACCGTTTGACCTCAAACGATATG
GCGATGATCTTGCGAAACACAAAGGATGGTCAAGAGAGACAATCGACTTTATGTCAAAGGTGTTTTTTGAATTAGATTTT
GTTAAAATAAGCAATGGAATCATATCCTTAGATACATCAGCTTCAAAGAAGGATTTAAATGCTTCACCCACATATCAAAG
AAAGCAAGCACAATATGCTCTTGAGAATGAATTGCTTTACTCGTCGTTTCAGCAATTAAAAAACTGGTTCGATCAGCATA
TTCAAGGGTCTGTTATGATTGAGGAGGAAATGAAGGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.016

98.096

0.549