Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LS684_RS15135 Genome accession   NZ_CP089997
Coordinates   2976412..2978844 (-) Length   810 a.a.
NCBI ID   WP_233807148.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2971412..2983844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS15115 (LS684_15115) - 2974266..2975351 (-) 1086 WP_233807140.1 AI-2E family transporter -
  LS684_RS15120 (LS684_15120) - 2975461..2975595 (-) 135 WP_233807142.1 YrzQ family protein -
  LS684_RS15125 (LS684_15125) - 2975619..2975810 (-) 192 WP_233807144.1 hypothetical protein -
  LS684_RS15130 (LS684_15130) - 2975823..2976311 (-) 489 WP_233807146.1 PRC-barrel domain-containing protein -
  LS684_RS15135 (LS684_15135) recD2 2976412..2978844 (-) 2433 WP_233807148.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LS684_RS15140 (LS684_15140) - 2978877..2979542 (-) 666 WP_233807150.1 tetratricopeptide repeat protein -
  LS684_RS15145 (LS684_15145) mnmA 2979640..2980755 (-) 1116 WP_233807152.1 tRNA 2-thiouridine(34) synthase MnmA -
  LS684_RS15150 (LS684_15150) - 2980774..2981916 (-) 1143 WP_233807154.1 cysteine desulfurase family protein -
  LS684_RS15155 (LS684_15155) - 2982231..2982650 (-) 420 WP_233807156.1 Rrf2 family transcriptional regulator -
  LS684_RS15160 (LS684_15160) - 2982647..2983330 (-) 684 WP_233807158.1 YitT family protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91640.26 Da        Isoelectric Point: 4.8303

>NTDB_id=639917 LS684_RS15135 WP_233807148.1 2976412..2978844(-) (recD2) [Cytobacillus spongiae strain CY-G]
MDIQDSLDLFAEQGKYMKGKHLVTIFRNDQNLYTVMRIRIEETNIDYEDKEAVVIGYFPQLHEQETYIFYGEEKEHPKFG
TQFQATHFRKDIPQSKEGVISYLSSDLFKGIGKKTAENIVETLGENAISRILKEPSLLDQVPKLPPEKAKSLYDNLMEHQ
GLEQAMIALNQYGFGPQLSMKIYQQYKENTIHILQSNPYQLVEDIEGIGFARADDLGYQIGISGSHPDRIKAACLYTLES
ESMQSGHVYVEAKSLLEQVKRLLEDNQRDSIDFQAISGEIVKLQEEGKIIIEERRLYLPSLYFAEKGLVTNIHRLLKQTD
YADQFPESEFLLSLGNLEERLNVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYADLHGCSLSPNDYKKEE
PFPFLLTAPTGRAAKRMMESTGLPAVTIHRLLGWNGSNGFDRHEENPLEGKILIVDESSMVDIWLANQLFKALPDQMQVI
LVGDEDQLPSVGPGQVLKDLLRSQSVPTVRLTDIYRQAEGSSIIELAHEIKKGTLPEDISTQKPDRSFIKCASTQIADVV
KKVALNAKNKGYTAKDIQVLAPMYRGPAGIDKLNELLQEIFNPNPDGTRKELVFGEVKYRIGDKVLQLVNQPENHVFNGD
IGEIVSIFYAKENTEKQDMIVASFDGIEATYTRQDLNQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLIYTAIT
RSQQFLILCGEEDAFKMGIQRGDDTARQTSLTERLKETIGFINEENSDFEEKKRSAEIQLTEENYLNVDPLIGMENITPY
DFLTEVPVNS

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=639917 LS684_RS15135 WP_233807148.1 2976412..2978844(-) (recD2) [Cytobacillus spongiae strain CY-G]
TTGGATATTCAAGATTCACTTGATTTGTTTGCAGAGCAAGGGAAGTATATGAAGGGCAAGCATCTAGTCACAATTTTCCG
CAATGACCAAAATCTATATACCGTTATGCGAATTCGAATTGAAGAAACAAATATAGACTATGAGGACAAGGAAGCTGTAG
TGATCGGATACTTTCCTCAATTACATGAACAGGAAACGTATATTTTTTATGGAGAAGAAAAAGAACACCCTAAGTTTGGA
ACTCAATTTCAAGCAACTCACTTCCGTAAGGATATTCCTCAATCCAAGGAAGGGGTAATTAGCTATTTATCGAGTGACCT
GTTTAAAGGAATTGGAAAAAAAACAGCTGAAAATATTGTCGAGACCCTTGGAGAAAATGCGATTTCGCGGATTTTGAAAG
AGCCTTCCCTGCTAGATCAAGTGCCAAAGCTCCCTCCTGAAAAAGCAAAATCCTTGTACGATAATTTAATGGAACATCAA
GGGCTCGAGCAAGCAATGATTGCTCTAAACCAATATGGTTTTGGTCCACAATTATCTATGAAAATTTATCAACAGTATAA
AGAAAATACCATACATATTCTTCAATCAAACCCATATCAGCTTGTAGAGGATATTGAAGGGATTGGCTTTGCAAGGGCGG
ATGATTTGGGCTATCAGATTGGAATCAGTGGCAGTCATCCTGATCGAATTAAAGCTGCTTGCTTATATACACTTGAGTCT
GAAAGTATGCAATCTGGACACGTATATGTAGAGGCGAAAAGTCTCCTTGAGCAAGTAAAGCGATTGTTGGAGGATAACCA
AAGGGATTCGATTGATTTTCAAGCGATATCGGGAGAAATCGTAAAGCTGCAAGAGGAAGGCAAAATTATCATAGAAGAAA
GACGCCTCTATTTACCTTCGCTTTACTTTGCTGAAAAGGGACTTGTGACGAATATTCATAGGCTGTTGAAGCAAACTGAC
TACGCAGATCAGTTTCCTGAATCCGAGTTTTTGCTCTCACTCGGCAACCTTGAGGAGAGGTTAAACGTCCAATATGCACC
TACACAGAAAGAAGCCATACAAACAGCTCTCATGTCTCCGATGTTAATATTAACAGGAGGTCCAGGTACAGGGAAAACAA
CGGTCATTAAAGGAATCGTGGAGCTTTACGCTGATTTGCATGGCTGTTCATTAAGCCCGAATGATTATAAGAAGGAAGAA
CCGTTCCCCTTTTTGTTAACTGCACCAACTGGAAGAGCAGCCAAACGGATGATGGAGTCAACCGGATTACCTGCTGTTAC
GATTCATCGCTTATTAGGCTGGAATGGGTCAAATGGCTTTGACCGTCATGAGGAAAATCCGTTAGAAGGCAAAATATTAA
TTGTGGACGAATCATCAATGGTCGATATATGGCTAGCTAATCAACTCTTTAAAGCCCTCCCAGACCAGATGCAAGTCATA
CTTGTTGGTGATGAGGATCAGCTTCCTTCAGTTGGGCCTGGTCAAGTATTAAAGGACTTATTGAGATCACAGAGTGTACC
TACTGTTAGATTAACAGATATTTATCGACAAGCCGAAGGCTCGTCCATCATTGAACTCGCTCATGAAATTAAGAAAGGTA
CATTACCAGAAGATATTTCCACTCAAAAGCCTGACCGTTCATTTATCAAGTGTGCTTCTACCCAAATCGCGGACGTTGTC
AAAAAAGTGGCATTAAATGCAAAAAATAAAGGGTATACAGCAAAGGATATACAAGTGCTTGCACCGATGTATAGAGGCCC
TGCAGGAATTGATAAGCTTAATGAGCTTTTGCAAGAAATTTTCAATCCCAATCCAGATGGCACACGTAAAGAGCTTGTAT
TTGGCGAAGTGAAATACCGAATTGGCGATAAAGTCCTCCAATTAGTTAATCAGCCTGAAAATCATGTGTTTAATGGTGAC
ATTGGCGAGATTGTTTCCATTTTTTATGCAAAGGAAAATACTGAAAAACAAGACATGATTGTTGCATCCTTTGATGGAAT
AGAAGCAACTTATACAAGGCAGGACTTGAATCAAATTACACATGCGTATTGCTGCTCAGTTCATAAATCTCAAGGGAGTG
AATTTCCAATTGTCATTCTCCCAGTAGTAAAGAGCTATTATCGAATGCTGAGACGCAATTTAATTTATACAGCGATTACT
AGGAGTCAGCAGTTTTTAATTTTGTGTGGGGAAGAAGACGCATTTAAGATGGGGATTCAACGAGGAGACGATACAGCTCG
GCAAACTAGCTTAACGGAAAGGCTGAAAGAAACGATTGGTTTCATAAACGAGGAGAATTCCGACTTTGAAGAAAAAAAAC
GTTCAGCAGAAATTCAGTTAACGGAAGAAAACTATCTGAACGTTGATCCGCTAATAGGGATGGAAAACATTACTCCATAC
GACTTTTTAACAGAAGTTCCAGTTAATTCGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.519

99.136

0.61