Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   P795_RS09410 Genome accession   NC_023028
Coordinates   2041735..2042436 (-) Length   233 a.a.
NCBI ID   WP_023896832.1    Uniprot ID   -
Organism   Acinetobacter baumannii ZW85-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2036735..2047436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS09380 (P795_9315) - 2037041..2037484 (-) 444 WP_001246675.1 SRPBCC family protein -
  P795_RS09385 (P795_9320) tadA 2037554..2038058 (-) 505 Protein_1844 tRNA adenosine(34) deaminase TadA -
  P795_RS09390 (P795_9325) - 2038065..2039189 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  P795_RS09395 (P795_9330) ung 2039186..2039899 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  P795_RS09400 (P795_9335) - 2039950..2040546 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  P795_RS09405 (P795_9340) gspK 2040776..2041735 (-) 960 WP_023896831.1 type II secretion system minor pseudopilin GspK -
  P795_RS09410 (P795_9345) xcpW 2041735..2042436 (-) 702 WP_023896832.1 type II secretion system minor pseudopilin GspJ Machinery gene
  P795_RS09415 (P795_9350) xcpV 2042436..2042816 (-) 381 WP_023896833.1 type II secretion system minor pseudopilin GspI Machinery gene
  P795_RS09420 (P795_9355) - 2042806..2043360 (-) 555 WP_000841373.1 type II secretion system protein -
  P795_RS09425 (P795_9360) - 2043370..2043978 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  P795_RS09430 (P795_9365) - 2044016..2044789 (-) 774 WP_000497298.1 TatD family hydrolase -
  P795_RS09435 (P795_9370) - 2044807..2045148 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  P795_RS09440 (P795_9375) - 2045160..2046140 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  P795_RS09445 (P795_9380) kdsB 2046152..2046913 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26641.66 Da        Isoelectric Point: 9.5501

>NTDB_id=63968 P795_RS09410 WP_023896832.1 2041735..2042436(-) (xcpW) [Acinetobacter baumannii ZW85-1]
MIKNKYIHIRSIDSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEMHLFALQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=63968 P795_RS09410 WP_023896832.1 2041735..2042436(-) (xcpW) [Acinetobacter baumannii ZW85-1]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAATGCATTTATTTGCATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGAGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.283

100

0.983

Multiple sequence alignment