Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LU301_RS10075 Genome accession   NZ_CP089978
Coordinates   2014726..2015163 (-) Length   145 a.a.
NCBI ID   WP_305270436.1    Uniprot ID   -
Organism   Moraxella sp. ZY210820     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009726..2020163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU301_RS10045 (LU301_10030) - 2010058..2011359 (-) 1302 WP_305270426.1 lytic murein transglycosylase -
  LU301_RS10050 (LU301_10035) truB 2011459..2012373 (-) 915 WP_370692196.1 tRNA pseudouridine(55) synthase TruB -
  LU301_RS10055 (LU301_10040) rplS 2012446..2012823 (-) 378 WP_305270430.1 50S ribosomal protein L19 -
  LU301_RS10060 (LU301_10045) trmD 2012956..2013723 (-) 768 WP_370692258.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LU301_RS10065 (LU301_10050) rimM 2013735..2014286 (-) 552 WP_305270432.1 ribosome maturation factor RimM -
  LU301_RS10070 (LU301_10055) rpsP 2014322..2014573 (-) 252 WP_305270434.1 30S ribosomal protein S16 -
  LU301_RS10075 (LU301_10060) comF 2014726..2015163 (-) 438 WP_305270436.1 type IV pilin protein Machinery gene
  LU301_RS10080 (LU301_10065) - 2015163..2015654 (-) 492 WP_305270439.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LU301_RS10085 (LU301_10075) - 2015666..2019553 (-) 3888 WP_305270441.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16116.46 Da        Isoelectric Point: 9.5845

>NTDB_id=639636 LU301_RS10075 WP_305270436.1 2014726..2015163(-) (comF) [Moraxella sp. ZY210820]
MQKGFTLIELMIVIAIIAVLASIAYPAYQDYIIRGHRVDMQQEMMRVAQNIQRYKVANKVYDSGKTIADFGKANYPTDKP
LYTLSLTWTPSGASRPSDWVLVATPIATERQKGNGSLRLNGQGHKCWTKGSDNCTLSATSTWEGN

Nucleotide


Download         Length: 438 bp        

>NTDB_id=639636 LU301_RS10075 WP_305270436.1 2014726..2015163(-) (comF) [Moraxella sp. ZY210820]
ATGCAAAAAGGGTTTACTTTAATTGAATTGATGATTGTGATTGCAATTATTGCAGTATTAGCTTCAATTGCTTATCCAGC
ATATCAAGATTATATCATACGTGGTCATCGTGTAGATATGCAACAAGAAATGATGCGTGTAGCACAAAATATTCAACGTT
ATAAAGTGGCGAATAAGGTGTATGATAGTGGTAAAACTATTGCAGATTTTGGCAAGGCGAACTATCCAACAGATAAACCG
CTGTATACATTGAGTTTAACATGGACACCATCAGGAGCGTCCCGCCCATCGGATTGGGTTCTAGTGGCAACGCCAATTGC
AACTGAACGTCAGAAAGGCAATGGTTCATTGCGTTTGAATGGACAAGGGCATAAATGCTGGACTAAGGGGTCTGACAATT
GTACTCTATCAGCAACTTCCACATGGGAAGGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

47.945

100

0.483
  pilE Acinetobacter baumannii D1279779

47.917

99.31

0.476