Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   LVD18_RS06100 Genome accession   NZ_CP089850
Coordinates   1190018..1190848 (+) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain BNS11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1185018..1195848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD18_RS06085 (LVD18_06085) - 1186599..1186940 (-) 342 WP_044005624.1 ArsR/SmtB family transcription factor -
  LVD18_RS06090 (LVD18_06090) - 1187063..1188994 (+) 1932 WP_034982425.1 heavy metal translocating P-type ATPase -
  LVD18_RS06095 (LVD18_06095) - 1189047..1189649 (-) 603 WP_003701011.1 nitroreductase family protein -
  LVD18_RS06100 (LVD18_06100) endA 1190018..1190848 (+) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  LVD18_RS06105 (LVD18_06105) - 1190960..1191169 (-) 210 WP_044005512.1 hypothetical protein -
  LVD18_RS06110 (LVD18_06110) brnQ 1191709..1193091 (+) 1383 WP_170102504.1 branched-chain amino acid transport system II carrier protein -
  LVD18_RS06115 (LVD18_06115) dhaS 1193237..1193761 (+) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  LVD18_RS06120 (LVD18_06120) - 1193762..1194718 (-) 957 WP_095758778.1 DhaKLM operon coactivator DhaQ -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=638927 LVD18_RS06100 WP_003709392.1 1190018..1190848(+) (endA) [Ligilactobacillus salivarius strain BNS11]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=638927 LVD18_RS06100 WP_003709392.1 1190018..1190848(+) (endA) [Ligilactobacillus salivarius strain BNS11]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489