Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SLV14_RS25915 Genome accession   NZ_CP106840
Coordinates   5923560..5925773 (+) Length   737 a.a.
NCBI ID   WP_263271312.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5918560..5930773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14_RS25895 (SLV14_005192) - 5918943..5919926 (-) 984 WP_263271307.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -
  SLV14_RS25900 (SLV14_005193) - 5920092..5921243 (+) 1152 WP_263271309.1 Gfo/Idh/MocA family protein -
  SLV14_RS25905 (SLV14_005194) - 5921240..5922385 (+) 1146 WP_263271311.1 dihydrodipicolinate synthase family protein -
  SLV14_RS25910 (SLV14_005195) - 5922382..5923242 (+) 861 WP_208684097.1 sugar phosphate isomerase/epimerase family protein -
  SLV14_RS25915 (SLV14_005196) recD/recD2/recDB 5923560..5925773 (+) 2214 WP_263271312.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SLV14_RS25920 (SLV14_005197) - 5925950..5927239 (+) 1290 WP_208684101.1 citrate synthase -
  SLV14_RS25925 (SLV14_005198) - 5927788..5928075 (-) 288 WP_208684103.1 heavy-metal-associated domain-containing protein -
  SLV14_RS25930 (SLV14_005199) - 5928303..5928953 (+) 651 WP_263271314.1 DedA family protein -
  SLV14_RS25935 (SLV14_005200) - 5928994..5930025 (-) 1032 WP_263271316.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79322.64 Da        Isoelectric Point: 6.6471

>NTDB_id=638503 SLV14_RS25915 WP_263271312.1 5923560..5925773(+) (recD/recD2/recDB) [Streptomyces sp. Je 1-4]
MVNAAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDIIEREPARLVEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDAAISVTRNEPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGVQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLGELAADPEGVVREQVPGGADGAPPVTAVYLVPFHRAEISLAGRLTRLLRTDEDRMPAFRDV
DWDKALAWLARRTGAELAPEQQQAVRLALTQKVAVLTGGPGCGKSFTVRSVVELARAKKATVVLAAPTGRAAKRLSELTG
AEASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLD
GSGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPLTSGMTDFFLFAEEDAEEAGRLTVDVVARRIPAKFGLDPRRDVQV
LTPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGNNGVFNGTVGVVTALDCDEQRLTVR
TDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKALGQAVRTV
SAGRRCTALDHRLAGAM

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=638503 SLV14_RS25915 WP_263271312.1 5923560..5925773(+) (recD/recD2/recDB) [Streptomyces sp. Je 1-4]
ATGGTCAACGCAGCCGTCGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTATACGGTCGCGCG
GGTCGACACGGGCCGCGGCTCGGGCGATCTGCTGACCGTCGTCGGCGCGCTGCTCGGGGCGCAGCCGGGGGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACGGTCGAGAACTACACCACCGTCCTGCCCGCC
ACGATCCAGGGCATCCGCCGCTATCTGGGCTCCGGACTCATCAAGGGCATCGGGCCGCGGATCGCGGACCGCATCGTCGA
GCACTTCGGCACGGACACCCTCGACATCATCGAGCGCGAGCCCGCCCGCCTCGTCGAGGTACCGGGCCTGGGCCCCAAGC
GGACGAAGCTGATCGGCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGGGTG
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGTGACGCCGCCATCTCCGTCACCCGCAACGAGCCCTACCGCCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTGACGGCCGACCGCATCGCACAGTCCGTGGGCATTCCGCACGACAGCCCGG
ACCGGGTCAAGGCGGGCGTGCAGTACGCCCTGTCGCAGTCCACCGACCAGGGCCACTGCTTCCTTCCCGAGGAGCAACTG
ATCGCCGACGCGGTGAAGTTGCTCCAGGTCGACACCGGACTGGTCATCGACTGCCTGGGCGAGCTGGCCGCCGACCCGGA
GGGCGTGGTCCGCGAGCAGGTACCGGGCGGCGCGGACGGTGCGCCGCCGGTCACCGCCGTCTATCTGGTGCCGTTCCACC
GCGCCGAGATCTCCCTGGCCGGCCGGCTGACCCGGCTGCTGCGGACGGACGAGGACCGGATGCCGGCGTTCCGGGACGTC
GACTGGGACAAGGCGCTGGCATGGCTGGCGCGGCGGACGGGCGCCGAGCTGGCCCCCGAGCAGCAGCAGGCGGTGCGGCT
GGCGCTGACGCAGAAGGTCGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGGTCCGTCGTCGAGC
TGGCGCGTGCCAAGAAGGCCACGGTGGTGCTGGCGGCGCCCACGGGCCGGGCGGCCAAACGGCTCTCGGAGCTGACCGGG
GCGGAGGCCTCCACGGTCCACCGCCTCCTGGAGCTCAAGCCGGGCGGGGACGCCGCCTATGACGCGGACCGGCCGCTGGA
CGCCGATCTGGTGGTCGTCGACGAGGCGTCGATGCTGGATCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGG
GCGCCCATCTGCTGCTGGTCGGGGACGTCGACCAGCTGCCGTCGGTGGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGAC
GGGTCCGGCCCGGTGCCGGCGGTACGGCTGACCAGGATCTTCCGCCAGGCCCAGCAATCCGGGGTGGTCACCAACGCCCA
CCGCATCAACTCCGGCGTGCCGCCCCTGACGTCCGGAATGACGGACTTCTTCCTGTTCGCCGAGGAGGACGCCGAAGAGG
CCGGGCGGCTGACGGTGGATGTCGTGGCCCGCCGCATCCCGGCGAAGTTCGGCCTCGACCCGCGCCGGGACGTCCAGGTG
CTCACCCCGATGCACCGCGGTCCGGCCGGGGCGGGCGCCCTGAACGGCCTGCTCCAGCAGGCCGTCACCCCGGCCCGTCC
CGATCTGCCCGAGCGCCGCTTCGGCGGCCGGGTCTTCCGTGTCGGCGACAAGGTCACCCAGATCAGGAACAATTACGAAA
AGGGCAACAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCGCACTGGACTGTGACGAGCAGCGGCTGACCGTGCGC
ACGGATGAGGACGAGGAGGTTCCCTACGACTTCGACGAACTCGATGAACTCGCCCACGCCTATGCCGTGACGATCCATCG
TTCGCAGGGTAGTGAGTATCCAGCGGTGGTGATTCCGGTCACCACCAGTGCCTGGATGATGCTGCAGCGCAATCTGCTGT
ATACCGCCGTGACCCGGGCAAAGCGCTTGGTGGTGCTGGTCGGCTCCCGGAAAGCCCTGGGACAAGCCGTCCGCACGGTA
TCCGCCGGTCGGCGGTGTACGGCACTGGATCACCGGCTCGCCGGGGCGATGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(94-138)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-640)

AAA domain (AAA_30)

(336-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.902

100

0.362