Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LU294_RS08340 Genome accession   NZ_CP089743
Coordinates   1579727..1580506 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus paranthracis strain SHOU-BC01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574727..1585506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU294_RS08320 (LU294_08320) trmFO 1575381..1576685 (+) 1305 WP_001998091.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LU294_RS08325 (LU294_08325) xerC 1576751..1577650 (+) 900 WP_001101228.1 tyrosine recombinase XerC -
  LU294_RS08330 (LU294_08330) hslV 1577693..1578235 (+) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  LU294_RS08335 (LU294_08335) hslU 1578258..1579649 (+) 1392 WP_000550081.1 ATP-dependent protease ATPase subunit HslU -
  LU294_RS08340 (LU294_08340) codY 1579727..1580506 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LU294_RS08345 (LU294_08345) rpsB 1580856..1581557 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  LU294_RS08350 (LU294_08350) tsf 1581661..1582548 (+) 888 WP_001018580.1 translation elongation factor Ts -
  LU294_RS08355 (LU294_08355) pyrH 1582615..1583337 (+) 723 WP_000042663.1 UMP kinase -
  LU294_RS08360 (LU294_08360) frr 1583340..1583897 (+) 558 WP_000531500.1 ribosome recycling factor -
  LU294_RS08365 (LU294_08365) uppS 1583983..1584759 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=638440 LU294_RS08340 WP_000421288.1 1579727..1580506(+) (codY) [Bacillus paranthracis strain SHOU-BC01]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=638440 LU294_RS08340 WP_000421288.1 1579727..1580506(+) (codY) [Bacillus paranthracis strain SHOU-BC01]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTTTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459