Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LUM42_RS14940 Genome accession   NZ_CP089603
Coordinates   3205416..3206117 (+) Length   233 a.a.
NCBI ID   WP_232658241.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFN3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3200416..3211117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS14920 (LUM42_14920) - 3200850..3201512 (+) 663 WP_004728474.1 hypothetical protein -
  LUM42_RS14925 (LUM42_14925) - 3201568..3203877 (+) 2310 WP_232658240.1 Tex family protein -
  LUM42_RS14930 (LUM42_14930) - 3203960..3204430 (-) 471 WP_004728470.1 hypothetical protein -
  LUM42_RS14935 (LUM42_14935) bioH 3204559..3205329 (-) 771 WP_158108194.1 pimeloyl-ACP methyl ester esterase BioH -
  LUM42_RS14940 (LUM42_14940) comF 3205416..3206117 (+) 702 WP_232658241.1 phosphoribosyltransferase family protein Machinery gene
  LUM42_RS14945 (LUM42_14945) nfuA 3206218..3206805 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  LUM42_RS14950 (LUM42_14950) nudE 3206951..3207499 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  LUM42_RS14955 (LUM42_14955) cysQ 3207523..3208350 (+) 828 WP_232658242.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LUM42_RS14960 (LUM42_14960) - 3208411..3209169 (-) 759 WP_055465865.1 type II secretion system protein N -
  LUM42_RS14965 (LUM42_14965) - 3209166..3209675 (-) 510 WP_158141343.1 type II secretion system protein M -
  LUM42_RS14970 (LUM42_14970) gspL 3209685..3210896 (-) 1212 WP_232658243.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26279.60 Da        Isoelectric Point: 8.8982

>NTDB_id=638371 LUM42_RS14940 WP_232658241.1 3205416..3206117(+) (comF) [Vibrio furnissii strain VFN3]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPWLCAACLAWYAPTPRCTRCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLITCVPLHWRRQLRRGFNQSDVLARQLAQHLGSEYDPQLFSRPH
ATVPQHGLDKAQRRRNLNRAFVLNHVPCLQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=638371 LUM42_RS14940 WP_232658241.1 3205416..3206117(+) (comF) [Vibrio furnissii strain VFN3]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCTGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCACTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTACT
CGCGCCCAGAATCACCACGCCTGCGCCGCTGATTACTTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCAGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGTGCC
GTGCCTGCAACACGTAGCGATTGTCGACGATGTCGTCACCACCGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGTACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.378

100

0.644
  comF Vibrio campbellii strain DS40M4

48.954

100

0.502