Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KUH140013_RS04325 Genome accession   NZ_AP020324
Coordinates   831647..832420 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain KUN1163     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 826647..837420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUH140013_RS04290 (KUN1163_0796) - 826895..827665 (-) 771 WP_000473699.1 isoprenyl transferase -
  KUH140013_RS04295 (KUN1163_0797) frr 828038..828592 (-) 555 WP_001280006.1 ribosome recycling factor -
  KUH140013_RS04300 (KUN1163_0798) pyrH 828611..829333 (-) 723 WP_000057330.1 UMP kinase -
  KUH140013_RS04305 (KUN1163_0799) tsf 829470..830351 (-) 882 WP_000201392.1 translation elongation factor Ts -
  KUH140013_RS04310 - 830386..830499 (-) 114 WP_001789890.1 hypothetical protein -
  KUH140013_RS04315 (KUN1163_0800) rpsB 830533..831300 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  KUH140013_RS04320 - 831499..831573 (-) 75 WP_031761472.1 hypothetical protein -
  KUH140013_RS04325 (KUN1163_0801) codY 831647..832420 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KUH140013_RS04330 (KUN1163_0802) hslU 832445..833848 (-) 1404 WP_000379044.1 ATP-dependent protease ATPase subunit HslU -
  KUH140013_RS04335 (KUN1163_0803) hslV 833914..834459 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  KUH140013_RS04340 (KUN1163_0804) xerC 834456..835352 (-) 897 WP_001015601.1 tyrosine recombinase XerC -
  KUH140013_RS04345 (KUN1163_0805) trmFO 835770..837077 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=63837 KUH140013_RS04325 WP_000055337.1 831647..832420(-) (codY) [Staphylococcus aureus strain KUN1163]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=63837 KUH140013_RS04325 WP_000055337.1 831647..832420(-) (codY) [Staphylococcus aureus strain KUN1163]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment