Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUV29_RS08845 Genome accession   NZ_CP089592
Coordinates   1694718..1695497 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain Bsi     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689718..1700497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV29_RS08825 (LUV29_08825) trmFO 1690411..1691718 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LUV29_RS08830 (LUV29_08830) xerC 1691786..1692700 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  LUV29_RS08835 (LUV29_08835) clpQ 1692713..1693258 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  LUV29_RS08840 (LUV29_08840) hslU 1693275..1694678 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  LUV29_RS08845 (LUV29_08845) codY 1694718..1695497 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUV29_RS08850 (LUV29_08850) flgB 1695877..1696266 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  LUV29_RS08855 (LUV29_08855) flgC 1696266..1696718 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  LUV29_RS08860 (LUV29_08860) fliE 1696729..1697049 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  LUV29_RS08865 (LUV29_08865) fliF 1697095..1698706 (+) 1612 Protein_1686 flagellar basal-body MS-ring/collar protein FliF -
  LUV29_RS08870 (LUV29_08870) fliG 1698719..1699735 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  LUV29_RS08875 (LUV29_08875) fliH 1699728..1700480 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=638216 LUV29_RS08845 WP_003220850.1 1694718..1695497(+) (codY) [Bacillus subtilis strain Bsi]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=638216 LUV29_RS08845 WP_003220850.1 1694718..1695497(+) (codY) [Bacillus subtilis strain Bsi]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467