Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LUS72_RS21750 Genome accession   NZ_CP089518
Coordinates   4180343..4182679 (-) Length   778 a.a.
NCBI ID   WP_097830595.1    Uniprot ID   A0A2C0EVE4
Organism   Bacillus cereus strain PT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4175343..4187679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS21725 - 4177994..4178338 (+) 345 WP_097830599.1 PH domain-containing protein -
  LUS72_RS21730 - 4178382..4179449 (-) 1068 WP_097830598.1 AI-2E family transporter -
  LUS72_RS21735 - 4179626..4179838 (+) 213 WP_097830597.1 hypothetical protein -
  LUS72_RS21740 - 4179881..4180009 (-) 129 WP_001053553.1 YrzQ family protein -
  LUS72_RS21745 - 4180028..4180216 (-) 189 WP_097830596.1 hypothetical protein -
  LUS72_RS21750 recD2 4180343..4182679 (-) 2337 WP_097830595.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LUS72_RS21755 - 4182787..4183446 (-) 660 WP_264448249.1 tetratricopeptide repeat protein -
  LUS72_RS21760 mnmA 4183557..4184672 (-) 1116 WP_097830593.1 tRNA 2-thiouridine(34) synthase MnmA -
  LUS72_RS21765 - 4184689..4185834 (-) 1146 WP_097830592.1 cysteine desulfurase family protein -
  LUS72_RS21770 cymR 4185870..4186286 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87353.96 Da        Isoelectric Point: 5.2628

>NTDB_id=637894 LUS72_RS21750 WP_097830595.1 4180343..4182679(-) (recD2) [Bacillus cereus strain PT1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQFGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQGEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=637894 LUS72_RS21750 WP_097830595.1 4180343..4182679(-) (recD2) [Bacillus cereus strain PT1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTTAGTATGAAAATCATTGAAACAAATGAAACATACGACGAAAAAAAAGTGATGA
TAAATGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGATCACCCAAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTTGGTGAACATGCTATTTCTAAAATTATGGATG
ATCCTGATGCGCTAAATGGTGTTGTAAATAAGCAAAAAGCACAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTT
GAAAAAGTTATGAGTTTTTTAAATGGTTATGGTTTTGGGACGAAGCTTTCTATTAAAATTTATCAGCAATACAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGACGTGCATTAGGTATATCGGGTAATCACGACGATCGTGTACGTGCGGGGTGTTTTTATACATTAGAGAATGTTTCA
TTGCAATTTGGTCACGTGTATATGGAGAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGACATTGTAGGCTGCGTTGAAATGATGCAAGGTGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTGGCTTCGTTATTCTACTCTGAAAAGGGCGTTGTAAAATCAATTCGTCGTCTTATGAATCAAGAAGAAACTCCTTCA
TTCCCTGAAGCGGAAGTATTAAAGACATTAGGGCAAATTGAAGAGCAGCTGAAGGTACAGTATGCACCACTTCAGCAAGA
AGCAGTTCAAACTGCCCTTCATAAGCCGATGATGCTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGATTATCATTAAATCTAAATGAATATAGTGATGACAACCCATTTCCAATA
CTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGACTTCCAGCTTGCACAATTCATCGCTT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACTGATCCGGTTCAAGGAAAGCTTCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTGGCAAATCAATTGTTTAAATCCTTGCCGACGAATATTCAGGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGTGCCATCCCGACGGTAAAACT
TACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTAGCCCATGCGATAAAAGATGGGACGCTCCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATTAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCACCCATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTACAAGAAGTGTTTAACCCGAAAAGAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGGAGGGGTGATAAAGTACTTCAACTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAACCTGATTTGAACCAAATTACACATGCGTATTGCTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCAATTGTTA
TTATGCCGATTGTAAAGAGCTACTATCGTATGTTACGTCGTAATTTAATTTATACAGGTATTACAAGAAGCAAAAAATTT
CTTATCATTTGCGGAGAAGAAGCAGCTTTTCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGTCGATTGCAAGAATCACAAGGAGAGGTACAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C0EVE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577