Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUS72_RS18945 Genome accession   NZ_CP089518
Coordinates   3667079..3667858 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain PT1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3662079..3672858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS18920 uppS 3662824..3663600 (-) 777 WP_097830967.1 isoprenyl transferase -
  LUS72_RS18925 frr 3663686..3664243 (-) 558 WP_000531504.1 ribosome recycling factor -
  LUS72_RS18930 pyrH 3664246..3664968 (-) 723 WP_097830966.1 UMP kinase -
  LUS72_RS18935 tsf 3665035..3665922 (-) 888 WP_097830965.1 translation elongation factor Ts -
  LUS72_RS18940 rpsB 3666026..3666727 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  LUS72_RS18945 codY 3667079..3667858 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUS72_RS18950 hslU 3667936..3669327 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  LUS72_RS18955 hslV 3669350..3669892 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  LUS72_RS18960 xerC 3669935..3670834 (-) 900 WP_097830964.1 tyrosine recombinase XerC -
  LUS72_RS18965 trmFO 3670900..3672204 (-) 1305 WP_264447926.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=637886 LUS72_RS18945 WP_000421290.1 3667079..3667858(-) (codY) [Bacillus cereus strain PT1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=637886 LUS72_RS18945 WP_000421290.1 3667079..3667858(-) (codY) [Bacillus cereus strain PT1]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACACAAAGCTTATTC
AACATTACAGAAACATCTTCTAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACGTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459