Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LUZ08_RS02835 Genome accession   NZ_CP089489
Coordinates   507065..508135 (+) Length   356 a.a.
NCBI ID   WP_000775708.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1174_IV_ST22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502065..513135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ08_RS02805 - 502488..503951 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  LUZ08_RS02810 - 503932..504135 (+) 204 WP_000087561.1 YqgQ family protein -
  LUZ08_RS02815 - 504132..505118 (+) 987 WP_000161314.1 ROK family glucokinase -
  LUZ08_RS02820 - 505118..505447 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LUZ08_RS02825 - 505444..506067 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LUZ08_RS02830 comGA 506119..507093 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  LUZ08_RS02835 comGB 507065..508135 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LUZ08_RS02840 comGC 508149..508460 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LUZ08_RS02845 comGD 508438..508884 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  LUZ08_RS02850 comGE 508871..509170 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  LUZ08_RS02855 comGF 509088..509540 (+) 453 WP_111724816.1 competence type IV pilus minor pilin ComGF Machinery gene
  LUZ08_RS02860 - 509618..510790 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  LUZ08_RS02865 - 511014..511160 (+) 147 WP_001789879.1 hypothetical protein -
  LUZ08_RS02870 - 511150..511674 (+) 525 WP_001015117.1 shikimate kinase -
  LUZ08_RS02875 gcvT 511833..512924 (+) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41364.77 Da        Isoelectric Point: 10.0092

>NTDB_id=637384 LUZ08_RS02835 WP_000775708.1 507065..508135(+) (comGB) [Staphylococcus aureus strain E1174_IV_ST22]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=637384 LUZ08_RS02835 WP_000775708.1 507065..508135(+) (comGB) [Staphylococcus aureus strain E1174_IV_ST22]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997