Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   N9J97_RS27800 Genome accession   NZ_CP106784
Coordinates   5965548..5966144 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain NY5085     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5960548..5971144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N9J97_RS27780 (N9J97_27780) aroK 5961679..5962197 (-) 519 WP_003095833.1 shikimate kinase AroK -
  N9J97_RS27785 (N9J97_27785) pilQ 5962209..5964353 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  N9J97_RS27790 (N9J97_27790) comL/pilP 5964407..5964931 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  N9J97_RS27795 (N9J97_27795) pilO 5964928..5965551 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  N9J97_RS27800 (N9J97_27800) pilN 5965548..5966144 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  N9J97_RS27805 (N9J97_27805) pilM 5966144..5967208 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  N9J97_RS27810 (N9J97_27810) - 5967393..5969864 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=637199 N9J97_RS27800 WP_003095839.1 5965548..5966144(-) (pilN) [Pseudomonas aeruginosa strain NY5085]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=637199 N9J97_RS27800 WP_003095839.1 5965548..5966144(-) (pilN) [Pseudomonas aeruginosa strain NY5085]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369