Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   U063_RS00090 Genome accession   NC_022886
Coordinates   13750..14031 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori BM012A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8750..19031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U063_RS00070 (U063_0014) groES 9315..9671 (-) 357 WP_000671934.1 co-chaperone GroES -
  U063_RS00075 (U063_0015) dnaG 9958..11637 (+) 1680 WP_023591475.1 DNA primase -
  U063_RS00080 (U063_0016) - 11634..12686 (+) 1053 WP_023591476.1 MnmA/TRMU family protein -
  U063_RS00085 (U063_0017) - 12777..13604 (+) 828 WP_023591477.1 DUF5718 family protein -
  U063_RS00090 (U063_0018) comB2 13750..14031 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  U063_RS00095 (U063_0019) comB3 14031..14294 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  U063_RS00100 (U063_0020) comB4 14296..16659 (+) 2364 WP_023591478.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  U063_RS00105 (U063_0021) - 16981..18321 (+) 1341 WP_023591479.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=63685 U063_RS00090 WP_001272690.1 13750..14031(+) (comB2) [Helicobacter pylori BM012A]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=63685 U063_RS00090 WP_001272690.1 13750..14031(+) (comB2) [Helicobacter pylori BM012A]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment