Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   LLE35_RS02355 Genome accession   NZ_CP106773
Coordinates   452561..453511 (+) Length   316 a.a.
NCBI ID   WP_003699627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 447561..458511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS02330 (LLE35_02320) - 448210..448719 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  LLE35_RS02335 (LLE35_02325) - 448951..449532 (-) 582 WP_003690895.1 superoxide dismutase -
  LLE35_RS02340 (LLE35_02330) dnaB 449696..451102 (+) 1407 WP_003699622.1 replicative DNA helicase -
  LLE35_RS02345 (LLE35_02335) pilH 451256..451921 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LLE35_RS02350 (LLE35_02340) pilV 451953..452564 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  LLE35_RS02355 (LLE35_02345) pilJ 452561..453511 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  LLE35_RS02360 (LLE35_02350) pilK 453490..454101 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LLE35_RS02365 (LLE35_02355) pilL 454103..454576 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  LLE35_RS02370 (LLE35_02360) - 454646..454954 (-) 309 WP_025456177.1 AzlD family protein -
  LLE35_RS02375 (LLE35_02365) - 454951..455661 (-) 711 Protein_466 AzlC family ABC transporter permease -
  LLE35_RS02380 (LLE35_02370) dut 455827..456279 (+) 453 WP_003699637.1 dUTP diphosphatase -
  LLE35_RS02385 (LLE35_02375) dapC 456355..457542 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  LLE35_RS02390 (LLE35_02380) yaaA 457698..458477 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34788.50 Da        Isoelectric Point: 9.1777

>NTDB_id=636770 LLE35_RS02355 WP_003699627.1 452561..453511(+) (pilJ) [Neisseria gonorrhoeae strain 10562]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 951 bp        

>NTDB_id=636770 LLE35_RS02355 WP_003699627.1 452561..453511(+) (pilJ) [Neisseria gonorrhoeae strain 10562]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTGATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

93.038

100

0.93