Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   YBT1518_RS30230 Genome accession   NC_022873
Coordinates   5988696..5989217 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus thuringiensis YBT-1518     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5983696..5994217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS30210 (YBT1518_30705) rplI 5984906..5985352 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  YBT1518_RS30215 (YBT1518_30710) - 5985349..5987322 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  YBT1518_RS30220 (YBT1518_30715) - 5987401..5988336 (-) 936 WP_023523631.1 YybS family protein -
  YBT1518_RS30225 (YBT1518_30720) rpsR 5988417..5988650 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  YBT1518_RS30230 (YBT1518_30725) ssbA 5988696..5989217 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  YBT1518_RS30235 (YBT1518_30730) rpsF 5989244..5989534 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  YBT1518_RS30240 (YBT1518_30735) ychF 5989726..5990826 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  YBT1518_RS30245 (YBT1518_30740) - 5990942..5991139 (-) 198 WP_000435486.1 DUF951 domain-containing protein -
  YBT1518_RS30250 (YBT1518_30745) - 5991160..5992041 (-) 882 WP_000365115.1 mechanosensitive ion channel family protein -
  YBT1518_RS30255 (YBT1518_30750) yyaC 5992301..5992897 (+) 597 WP_001020709.1 spore protease YyaC -
  YBT1518_RS30260 (YBT1518_30755) spo0J 5992918..5993769 (-) 852 WP_023523632.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=63648 YBT1518_RS30230 WP_002094213.1 5988696..5989217(-) (ssbA) [Bacillus thuringiensis YBT-1518]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=63648 YBT1518_RS30230 WP_002094213.1 5988696..5989217(-) (ssbA) [Bacillus thuringiensis YBT-1518]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment