Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LUX28_RS08480 Genome accession   NZ_CP089310
Coordinates   1674827..1675606 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain A4P130     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1669827..1680606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX28_RS08460 (LUX28_08460) trmFO 1670514..1671821 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LUX28_RS08465 (LUX28_08465) xerC 1671891..1672808 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  LUX28_RS08470 (LUX28_08470) hslV 1672824..1673369 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LUX28_RS08475 (LUX28_08475) hslU 1673386..1674789 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  LUX28_RS08480 (LUX28_08480) codY 1674827..1675606 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LUX28_RS08485 (LUX28_08485) flgB 1675960..1676349 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LUX28_RS08490 (LUX28_08490) flgC 1676349..1676801 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  LUX28_RS08495 (LUX28_08495) fliE 1676812..1677132 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LUX28_RS08500 (LUX28_08500) fliF 1677175..1678785 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  LUX28_RS08505 (LUX28_08505) fliG 1678798..1679814 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LUX28_RS08510 (LUX28_08510) fliH 1679807..1680562 (+) 756 WP_053573438.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=636395 LUX28_RS08480 WP_003154263.1 1674827..1675606(+) (codY) [Bacillus velezensis strain A4P130]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=636395 LUX28_RS08480 WP_003154263.1 1674827..1675606(+) (codY) [Bacillus velezensis strain A4P130]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471