Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   YBT1518_RS20655 Genome accession   NC_022873
Coordinates   4157411..4158190 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis YBT-1518     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4152411..4163190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YBT1518_RS20630 (YBT1518_20965) uppS 4153159..4153935 (-) 777 WP_000971297.1 isoprenyl transferase -
  YBT1518_RS20635 (YBT1518_20970) frr 4154021..4154578 (-) 558 WP_000531505.1 ribosome recycling factor -
  YBT1518_RS20640 (YBT1518_20975) pyrH 4154581..4155303 (-) 723 WP_000042669.1 UMP kinase -
  YBT1518_RS20645 (YBT1518_20980) tsf 4155370..4156257 (-) 888 WP_001018577.1 translation elongation factor Ts -
  YBT1518_RS20650 (YBT1518_20985) rpsB 4156361..4157062 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  YBT1518_RS20655 (YBT1518_20990) codY 4157411..4158190 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  YBT1518_RS20660 (YBT1518_20995) hslU 4158268..4159659 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  YBT1518_RS20665 (YBT1518_21000) hslV 4159682..4160224 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  YBT1518_RS20670 (YBT1518_21005) xerC 4160267..4161166 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  YBT1518_RS20675 (YBT1518_21010) trmFO 4161232..4162536 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=63627 YBT1518_RS20655 WP_000421290.1 4157411..4158190(-) (codY) [Bacillus thuringiensis YBT-1518]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=63627 YBT1518_RS20655 WP_000421290.1 4157411..4158190(-) (codY) [Bacillus thuringiensis YBT-1518]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment