Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA16_RS26775 Genome accession   NZ_CP106744
Coordinates   5681410..5681835 (+) Length   141 a.a.
NCBI ID   WP_269972868.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5676410..5686835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA16_RS26760 (PALA16_05308) pilX 5676974..5677561 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA16_RS26765 (PALA16_05309) pilY1 5677573..5681064 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  PALA16_RS26770 (PALA16_05310) pilY2 5681066..5681413 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA16_RS26775 (PALA16_05311) comF 5681410..5681835 (+) 426 WP_269972868.1 type 4a pilus minor pilin PilE Machinery gene
  PALA16_RS26780 (PALA16_05312) ispH 5681882..5682826 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA16_RS26785 (PALA16_05313) fkpB 5682912..5683352 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA16_RS26790 (PALA16_05314) lspA 5683345..5683854 (-) 510 WP_003094728.1 signal peptidase II -
  PALA16_RS26795 (PALA16_05315) ileS 5683847..5686678 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15231.22 Da        Isoelectric Point: 9.9134

>NTDB_id=636174 PALA16_RS26775 WP_269972868.1 5681410..5681835(+) (comF) [Pseudomonas aeruginosa strain PALA16]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLDNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=636174 PALA16_RS26775 WP_269972868.1 5681410..5681835(+) (comF) [Pseudomonas aeruginosa strain PALA16]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGGACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376