Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA14_RS08010 Genome accession   NZ_CP106742
Coordinates   1729948..1730373 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1724948..1735373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA14_RS07990 (PALA14_01577) ileS 1725105..1727936 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PALA14_RS07995 (PALA14_01578) lspA 1727929..1728438 (+) 510 WP_003110420.1 signal peptidase II -
  PALA14_RS08000 (PALA14_01579) fkpB 1728431..1728871 (+) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA14_RS08005 (PALA14_01580) ispH 1728957..1729901 (+) 945 WP_034021636.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA14_RS08010 (PALA14_01581) comF 1729948..1730373 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA14_RS08015 (PALA14_01582) pilY2 1730370..1730717 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA14_RS08020 (PALA14_01583) pilY1 1730719..1734210 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PALA14_RS08025 (PALA14_01584) pilX 1734222..1734809 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=635923 PALA14_RS08010 WP_003094721.1 1729948..1730373(-) (comF) [Pseudomonas aeruginosa strain PALA14]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=635923 PALA14_RS08010 WP_003094721.1 1729948..1730373(-) (comF) [Pseudomonas aeruginosa strain PALA14]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383